Strain Fitness in Pseudomonas putida KT2440 around PP_4596

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
5,213,392	+		PP_4594	0.73	-1.4
5,213,522	-		PP_4594	0.84	-1.3
5,213,522	-		PP_4594	0.84	-1.1
5,213,554	+		PP_4594	0.87	-0.2
5,213,555	-		PP_4594	0.87	+0.1
5,213,571	-		PP_4594	0.88	+0.3
5,213,667	-				-0.4
5,213,733	+				-0.2
5,213,733	+				+1.2
5,213,733	+				+0.4
5,213,777	+				-2.1
5,213,803	+				-1.1
5,213,838	+		PP_4595	0.14	+0.6
5,213,939	+		PP_4595	0.34	-0.9
5,213,939	+		PP_4595	0.34	-1.2
5,213,939	+		PP_4595	0.34	-2.4
5,213,940	-		PP_4595	0.34	-0.2
5,213,940	-		PP_4595	0.34	-0.8
5,214,089	+		PP_4595	0.64	+0.7
5,214,089	+		PP_4595	0.64	-0.6
5,214,113	+		PP_4595	0.69	-0.4
5,214,113	+		PP_4595	0.69	+2.0
5,214,113	+		PP_4595	0.69	+2.0
5,214,113	+		PP_4595	0.69	+1.0
5,214,114	-		PP_4595	0.69	-1.1
5,214,114	-		PP_4595	0.69	+0.4
5,214,139	+		PP_4595	0.74	+1.9
5,214,139	+		PP_4595	0.74	-0.8
5,214,139	+		PP_4595	0.74	-0.7
5,214,140	-		PP_4595	0.75	-0.4
5,214,149	+		PP_4595	0.76	-0.5
5,214,150	-		PP_4595	0.77	-0.0
5,214,150	-		PP_4595	0.77	-1.5
5,214,162	-		PP_4595	0.79	-0.4
5,214,176	-		PP_4595	0.82	-0.6
5,214,234	-				-0.6
5,214,234	-				-0.7
5,214,332	+				+0.5
5,214,332	+				+0.4
5,214,333	-				-0.1
5,214,333	-				+0.4
5,214,333	-				-1.3
5,214,458	+				+0.7
5,214,459	-				-0.2
5,214,459	-				-1.5
5,214,460	+				-0.3
5,214,460	+				+0.4
5,214,460	+				+0.2
5,214,461	-				-1.4
5,214,461	-				-1.9
5,214,461	-				+0.6
5,214,461	-				+1.0
5,214,475	+				-0.6
5,214,475	+				-0.5
5,214,475	+				-0.1
5,214,514	+				-1.6
5,214,515	-				-0.7
5,214,515	-				-2.0
5,214,515	-				-0.0
5,214,545	-				+0.5
5,214,545	-				+1.2
5,214,712	+				+1.0
5,214,712	+		PP_4596	0.14	+0.7
5,214,713	-		PP_4596	0.15	-0.3
5,214,713	-		PP_4596	0.15	+0.6
5,214,727	+		PP_4596	0.15	-0.3
5,214,727	+		PP_4596	0.15	-1.2
5,214,728	-		PP_4596	0.15	-1.8
5,214,728	-		PP_4596	0.15	-2.4
5,214,728	-		PP_4596	0.15	-0.3
5,214,786	+		PP_4596	0.18	-0.6
5,214,786	+		PP_4596	0.18	-0.4
5,214,970	+		PP_4596	0.26	-0.4
5,214,971	-		PP_4596	0.26	+0.0
5,214,971	-		PP_4596	0.26	+0.5
5,214,971	-		PP_4596	0.26	+0.7
5,214,986	-		PP_4596	0.26	-0.4
5,215,058	+		PP_4596	0.29	-1.0
5,215,058	+		PP_4596	0.29	-0.5
5,215,059	-		PP_4596	0.29	+1.1
5,215,428	+		PP_4596	0.45	+0.2
5,215,428	+		PP_4596	0.45	-0.9
5,215,429	-		PP_4596	0.45	-0.4
5,215,429	-		PP_4596	0.45	-1.7
5,215,463	+		PP_4596	0.47	-0.4
5,215,464	-		PP_4596	0.47	+0.1
5,215,481	+		PP_4596	0.47	-0.6
5,215,637	-		PP_4596	0.54	-2.2
5,215,637	-		PP_4596	0.54	+0.4
5,215,726	+		PP_4596	0.58	+0.1
5,215,822	+		PP_4596	0.62	-1.0
5,215,823	-		PP_4596	0.62	-0.9
5,215,876	+		PP_4596	0.64	+0.3
5,215,877	-		PP_4596	0.64	+0.2
5,215,877	-		PP_4596	0.64	+0.3
5,216,191	+		PP_4596	0.78	-1.5
5,216,192	-		PP_4596	0.78	-0.6
5,216,212	+		PP_4596	0.79	-1.4
5,216,251	+		PP_4596	0.80	-0.4
5,216,252	-		PP_4596	0.81	+0.2
5,216,252	-		PP_4596	0.81	+0.5
5,216,252	-		PP_4596	0.81	-1.9
5,216,336	-		PP_4596	0.84	-0.1
5,216,336	-		PP_4596	0.84	+0.9
5,216,336	-		PP_4596	0.84	-1.6
5,216,386	+		PP_4596	0.86	-0.1
5,216,386	+		PP_4596	0.86	+1.0
5,216,386	+		PP_4596	0.86	-1.8
5,216,398	+		PP_4596	0.87	+0.8
5,216,398	+		PP_4596	0.87	-0.2
5,216,431	+		PP_4596	0.88	+0.2
5,216,431	+		PP_4596	0.88	+0.7
5,216,431	+		PP_4596	0.88	-0.2
5,216,432	-		PP_4596	0.88	+0.0
5,216,432	-		PP_4596	0.88	+0.7
5,216,432	-		PP_4596	0.88	-0.8
5,216,432	-		PP_4596	0.88	+1.0
5,216,678	-				-0.8
5,216,678	-				-0.3
5,216,678	-				-0.1
5,216,678	-				+0.7
5,216,678	-				+1.1
5,216,743	+				+0.7
5,216,743	+				-1.3
5,216,743	+				-0.2
5,216,743	+				+0.6
5,216,744	-				+0.5
5,216,780	+				+0.1
5,216,820	+				-1.1
5,216,821	-				-0.8
5,216,833	-				-0.9
5,216,890	+				+0.6
5,216,890	+				-2.8
5,216,891	-				-0.2
5,217,024	+				-1.7
5,217,024	+				+2.2
5,217,024	+				-0.1
5,217,025	-				-0.4
5,217,025	-				+1.6
5,217,025	-				-0.0
5,217,157	+		PP_4597	0.23	+0.5
5,217,157	+		PP_4597	0.23	-2.2
5,217,157	+		PP_4597	0.23	-0.1
5,217,352	+		PP_4597	0.42	+0.2
5,217,353	-		PP_4597	0.42	-2.2
5,217,353	-		PP_4597	0.42	-0.3
5,217,362	-		PP_4597	0.43	-1.4
5,217,571	+		PP_4597	0.64	+1.1
5,217,639	+		PP_4597	0.71	-0.4