Strain Fitness in Pseudomonas putida KT2440 around PP_4502

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
5,115,785	+				+0.4
5,115,785	+				+1.5
5,115,818	+				+0.2
5,115,818	+				-0.3
5,115,818	+				+1.4
5,115,818	+				+0.4
5,115,819	-				-2.1
5,115,821	+				-0.3
5,116,425	+				-0.1
5,116,425	+				-2.4
5,116,426	-				+0.4
5,116,426	-				-2.3
5,116,454	+		PP_4502	0.12	-1.9
5,116,621	+		PP_4502	0.62	-2.1
5,116,685	+		PP_4502	0.81	-0.6
5,116,685	+				-1.8
5,116,686	-		PP_4502	0.81	-1.4
5,116,686	-		PP_4502	0.81	-0.7
5,116,686	-		PP_4502	0.81	+1.4
5,116,703	+		PP_4502	0.86	-0.4
5,116,737	+				+0.9
5,116,738	-				-2.8
5,116,738	-				+2.4
5,116,774	-				+0.8
5,116,832	+				-1.6
5,116,832	+				+0.3
5,116,832	+				-0.3
5,116,833	-				+1.6
5,116,833	-				-1.7
5,116,835	-				+0.5
5,116,835	-				-0.9
5,117,060	+		PP_4503	0.22	+1.2
5,117,259	-		PP_4503	0.51	-2.3
5,117,318	-		PP_4503	0.60	+1.7
5,117,473	+		PP_4503	0.83	+1.6
5,117,474	-		PP_4503	0.83	-1.4
5,117,549	+				-0.3
5,117,550	-				+0.7
5,117,550	-				+0.9
5,117,572	+				-0.4
5,117,573	-				-0.0
5,117,575	+				+0.6
5,117,575	+				-0.2
5,117,576	-				-0.6
5,117,576	-				+1.4
5,117,576	-				+0.2
5,117,576	-				-0.1
5,117,576	-				+1.6
5,117,576	-				+0.7
5,117,578	+				+1.8
5,117,579	-				+1.8
5,117,579	-				+0.4
5,117,587	+				-0.5
5,117,587	+				-0.3
5,117,658	+				-0.6
5,117,658	+				+1.1
5,117,659	-				-1.3
5,117,669	+				-0.6
5,117,670	-				-0.5