Strain Fitness in Pseudomonas putida KT2440 around PP_4488

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
5,098,848	+		PP_4487	0.74	-0.8
5,098,849	-		PP_4487	0.74	-0.5
5,098,849	-				-0.6
5,098,850	+		PP_4487	0.74	-2.0
5,098,850	+		PP_4487	0.74	-2.2
5,098,850	+		PP_4487	0.74	-0.0
5,098,850	+		PP_4487	0.74	+0.7
5,098,851	-		PP_4487	0.74	-0.2
5,098,851	-		PP_4487	0.74	-1.1
5,098,851	-		PP_4487	0.74	-0.3
5,098,851	-		PP_4487	0.74	+0.7
5,098,851	-		PP_4487	0.74	+0.3
5,098,851	-		PP_4487	0.74	-0.5
5,098,851	-		PP_4487	0.74	+0.4
5,098,935	-		PP_4487	0.78	-0.1
5,098,935	-		PP_4487	0.78	+0.2
5,099,127	+		PP_4487	0.87	-1.0
5,099,180	+		PP_4487	0.90	-0.7
5,099,180	+		PP_4487	0.90	+0.1
5,099,181	-		PP_4487	0.90	-1.9
5,099,181	-		PP_4487	0.90	-1.0
5,099,181	-		PP_4487	0.90	+0.4
5,099,192	+				+1.4
5,099,192	+				+1.3
5,099,192	+				-0.6
5,099,192	+				-0.1
5,099,192	+				-1.3
5,099,193	-				-0.0
5,099,193	-				-0.6
5,099,193	-				-1.0
5,099,193	-				-1.3
5,099,215	-				-0.3
5,099,243	+				+0.2
5,099,279	+				-0.7
5,099,280	-				-0.6
5,099,280	-				-0.5
5,099,280	-				+0.1
5,099,282	+				+0.5
5,099,282	+				+0.8
5,099,283	-				+0.7
5,099,283	-				-1.1
5,099,283	-				-0.4
5,099,294	+				-0.8
5,099,309	-				-0.1
5,099,309	-				+1.0
5,099,315	-				+2.0
5,099,345	+				-0.1
5,099,348	+				+1.2
5,099,565	+				+0.3
5,099,602	-				-0.5
5,099,642	+				+0.4
5,099,643	-				-1.8
5,099,650	+				-0.1
5,099,650	+				-0.6
5,099,650	+				-2.6
5,099,651	-				-2.0
5,099,671	-				-3.0
5,099,676	+				-2.0
5,099,676	+				+1.0
5,099,676	+				-1.7
5,099,677	-				-0.8
5,099,683	-				-1.5
5,099,683	-				-0.3
5,099,754	-		PP_4488	0.37	-1.7
5,099,759	+		PP_4488	0.39	-1.9
5,099,759	+		PP_4488	0.39	-0.2
5,099,759	+		PP_4488	0.39	-3.0
5,099,843	+		PP_4488	0.72	-0.3
5,099,843	+		PP_4488	0.72	-1.8
5,099,843	+		PP_4488	0.72	-1.9
5,099,844	-		PP_4488	0.72	+0.0
5,099,844	-		PP_4488	0.72	-1.8
5,099,844	-		PP_4488	0.72	-1.0
5,099,844	-		PP_4488	0.72	+0.2
5,099,844	-		PP_4488	0.72	-0.8
5,099,915	+				+0.1
5,099,915	+				+0.2
5,099,916	-				+0.2
5,099,946	-				-1.0
5,099,973	+				+0.7
5,099,974	-				+0.1
5,099,974	-				+1.9
5,099,974	-				-0.1
5,099,974	-				+0.9
5,099,974	-				+0.5
5,099,998	+				-0.2
5,099,998	+				-0.1
5,099,999	-				+1.1
5,099,999	-				+1.3
5,099,999	-				+0.0
5,099,999	-				+0.4
5,100,001	+				-0.3
5,100,002	-				-0.2
5,100,002	-				+0.5
5,100,002	-				-0.3
5,100,002	-				-1.1
5,100,068	+				-0.0
5,100,267	-		PP_4489	0.13	-0.3
5,100,314	-		PP_4489	0.16	+0.3
5,100,352	+		PP_4489	0.18	-0.6
5,100,358	-		PP_4489	0.19	+0.9
5,100,371	+		PP_4489	0.19	-1.2
5,100,372	-		PP_4489	0.20	-0.6
5,100,514	+		PP_4489	0.29	-1.3
5,100,515	-		PP_4489	0.29	+1.0
5,100,515	-		PP_4489	0.29	+0.8
5,100,515	-		PP_4489	0.29	+1.5
5,100,531	-		PP_4489	0.30	-0.0
5,100,531	-		PP_4489	0.30	+0.8
5,100,611	+		PP_4489	0.35	-0.7
5,100,627	+		PP_4489	0.36	-0.1
5,100,627	+		PP_4489	0.36	+0.6
5,100,627	+		PP_4489	0.36	+1.0
5,100,673	+		PP_4489	0.39	-1.4
5,100,673	+		PP_4489	0.39	-0.4
5,100,673	+		PP_4489	0.39	-0.0
5,100,673	+		PP_4489	0.39	-1.2
5,100,674	-		PP_4489	0.39	+0.1
5,100,674	-		PP_4489	0.39	-1.3
5,100,674	-		PP_4489	0.39	-0.3
5,100,674	-		PP_4489	0.39	-0.0