Strain Fitness in Pseudomonas putida KT2440 around PP_4315

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
4,905,033	+				-0.1
4,905,033	+				+0.2
4,905,033	+				-1.7
4,905,033	+				-1.1
4,905,034	-				-1.4
4,905,157	-		PP_4313	0.26	-0.1
4,905,173	+		PP_4313	0.31	+1.4
4,905,174	-		PP_4313	0.31	+0.6
4,905,218	+		PP_4313	0.44	-0.5
4,905,219	-		PP_4313	0.45	-0.6
4,905,236	+		PP_4313	0.50	-0.6
4,905,324	+		PP_4313	0.76	-0.1
4,905,410	+				-2.3
4,905,410	+				+1.3
4,905,411	-				+1.5
4,905,486	-				+1.4
4,905,704	-		PP_4314	0.35	+2.2
4,905,706	+		PP_4314	0.35	-1.4
4,905,707	-		PP_4314	0.35	-0.9
4,905,716	+		PP_4314	0.37	+0.5
4,905,716	+		PP_4314	0.37	+0.9
4,905,717	-		PP_4314	0.37	+0.6
4,905,717	-		PP_4314	0.37	-0.0
4,905,869	+		PP_4314	0.69	-1.1
4,905,869	+		PP_4314	0.69	+0.8
4,905,876	-		PP_4314	0.70	-0.5
4,905,977	+				-0.1
4,905,978	-				-0.5
4,905,978	-				+1.7
4,905,978	-				-1.1
4,905,980	-				+0.4
4,905,980	-				+0.4
4,905,980	-				+0.2
4,906,007	+				+0.5
4,906,008	-				-1.7
4,906,010	+				+1.2
4,906,010	+				-0.2
4,906,011	-				+0.1
4,906,011	-				-0.6
4,906,016	+				-0.7
4,906,016	+				-0.1
4,906,016	+				-0.7
4,906,016	+				-0.2
4,906,016	+				-2.5
4,906,016	+				+0.3
4,906,016	+				-1.1
4,906,016	+				-0.4
4,906,016	+				-0.0
4,906,016	+				-0.2
4,906,016	+				-0.2
4,906,017	-				+0.8
4,906,017	-				+0.5
4,906,017	-				+0.4
4,906,017	-				-1.1
4,906,034	+				+0.3
4,906,035	-				-2.9
4,906,355	+		PP_4315	0.44	+0.9
4,906,355	+		PP_4315	0.44	+0.6
4,906,355	+				+1.9
4,906,355	+		PP_4315	0.44	-1.4
4,906,355	+		PP_4315	0.44	+0.2
4,906,355	+		PP_4315	0.44	+1.2
4,906,356	-		PP_4315	0.44	+0.9
4,906,356	-		PP_4315	0.44	+0.9
4,906,365	+		PP_4315	0.45	+2.3
4,906,365	+		PP_4315	0.45	-0.0
4,906,365	+		PP_4315	0.45	+0.4
4,906,366	-		PP_4315	0.45	+0.6
4,906,370	+		PP_4315	0.46	+0.0
4,906,371	-		PP_4315	0.46	+0.6
4,906,371	-		PP_4315	0.46	+0.3
4,906,559	+		PP_4315	0.70	+0.4
4,906,559	+		PP_4315	0.70	+0.8
4,906,560	-		PP_4315	0.70	-0.4
4,906,575	+		PP_4315	0.72	+0.4
4,906,575	+		PP_4315	0.72	-0.6
4,906,575	+		PP_4315	0.72	+0.6
4,906,575	+		PP_4315	0.72	-0.4
4,906,576	-		PP_4315	0.72	+0.3
4,906,576	-				-1.5
4,906,652	+		PP_4315	0.81	+0.9
4,906,652	+		PP_4315	0.81	+2.6
4,906,653	-		PP_4315	0.82	-1.3
4,906,835	+				+0.9
4,906,836	-				+1.8
4,907,024	+		PP_4316	0.19	+0.8
4,907,025	-		PP_4316	0.19	+0.1
4,907,118	+		PP_4316	0.29	+0.1
4,907,247	+		PP_4316	0.42	-2.1
4,907,248	-		PP_4316	0.42	+2.7
4,907,248	-		PP_4316	0.42	+0.7
4,907,280	+		PP_4316	0.46	+0.3
4,907,280	+		PP_4316	0.46	-1.1
4,907,280	+		PP_4316	0.46	+0.3
4,907,280	+		PP_4316	0.46	-0.7
4,907,557	-		PP_4316	0.75	-0.8
4,907,618	+		PP_4316	0.82	+0.7
4,907,745	+				+1.6
4,907,745	+				-0.6