Strain Fitness in Pseudomonas putida KT2440 around PP_4280

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
4,869,807	+		PP_4279	0.65	+0.9
4,869,828	+		PP_4279	0.66	+1.7
4,869,937	+		PP_4279	0.70	-1.6
4,870,030	+		PP_4279	0.74	-0.3
4,870,031	-		PP_4279	0.74	+0.0
4,870,031	-		PP_4279	0.74	+1.7
4,870,067	-		PP_4279	0.76	-0.8
4,870,067	-		PP_4279	0.76	-0.1
4,870,067	-		PP_4279	0.76	+0.4
4,870,087	+		PP_4279	0.77	-0.0
4,870,120	+		PP_4279	0.78	+0.1
4,870,121	-		PP_4279	0.78	-2.0
4,870,121	-		PP_4279	0.78	-1.0
4,870,180	+		PP_4279	0.80	-0.5
4,870,181	-		PP_4279	0.80	-0.4
4,870,184	-		PP_4279	0.81	-0.0
4,870,348	+		PP_4279	0.87	+0.0
4,870,522	+				-0.4
4,870,709	+				-0.5
4,870,710	-				-0.2
4,870,710	-				+0.1
4,870,733	+				-0.6
4,870,733	+				+1.8
4,870,755	+				+0.5
4,870,756	-				-0.4
4,870,756	-				-0.9
4,870,857	-		PP_4280	0.10	-1.0
4,870,935	+		PP_4280	0.20	-0.8
4,870,936	-		PP_4280	0.20	-1.7
4,871,047	+		PP_4280	0.33	-1.1
4,871,047	+		PP_4280	0.33	-0.3
4,871,047	+		PP_4280	0.33	-0.2
4,871,268	+				+0.4
4,871,523	+		PP_4280	0.89	+1.1
4,871,523	+		PP_4280	0.89	-0.8
4,871,523	+		PP_4280	0.89	-0.7
4,871,523	+		PP_4280	0.89	-0.3
4,871,523	+		PP_4280	0.89	-1.2
4,871,523	+		PP_4280	0.89	-0.7
4,871,524	-		PP_4280	0.89	-0.2
4,871,625	+				+2.7
4,871,626	-				-2.2
4,871,626	-				+0.0
4,871,626	-				-0.8
4,871,713	+				+0.8
4,871,713	+				-1.1
4,871,713	+				-1.2
4,871,713	+				-0.7
4,871,713	+				-0.7
4,871,713	+				+0.3
4,871,713	+				+1.2
4,871,714	-				-0.6
4,871,714	-				+1.6
4,871,714	-				-0.7
4,871,717	-				-0.4
4,871,717	-				+1.5
4,871,893	+		PP_4281	0.20	-1.1
4,871,922	+		PP_4281	0.23	-0.4
4,871,922	+		PP_4281	0.23	-0.2
4,871,922	+		PP_4281	0.23	+0.5
4,871,922	+		PP_4281	0.23	-0.2
4,871,922	+		PP_4281	0.23	-0.7
4,871,923	-		PP_4281	0.23	-0.5
4,871,923	-		PP_4281	0.23	-1.3
4,871,926	+		PP_4281	0.23	-0.1
4,871,926	+		PP_4281	0.23	+1.7
4,871,926	+		PP_4281	0.23	+0.3
4,871,926	+		PP_4281	0.23	-1.1
4,871,926	+		PP_4281	0.23	-1.1
4,871,927	-		PP_4281	0.23	+0.1
4,871,927	-		PP_4281	0.23	-0.6
4,871,927	-		PP_4281	0.23	+0.1
4,871,927	-		PP_4281	0.23	+1.5
4,871,927	-		PP_4281	0.23	-0.1
4,872,116	+		PP_4281	0.38	+0.2
4,872,116	+		PP_4281	0.38	-1.1
4,872,117	-		PP_4281	0.38	-1.9
4,872,117	-		PP_4281	0.38	+0.2
4,872,169	+		PP_4281	0.42	-0.6
4,872,223	+				-0.0
4,872,310	+		PP_4281	0.52	-0.2
4,872,310	+		PP_4281	0.52	+1.7
4,872,310	+		PP_4281	0.52	-0.5
4,872,310	+		PP_4281	0.52	-0.5
4,872,311	-		PP_4281	0.52	-1.0
4,872,311	-		PP_4281	0.52	-0.5
4,872,311	-		PP_4281	0.52	+0.2
4,872,311	-		PP_4281	0.52	-1.9
4,872,385	+		PP_4281	0.58	-0.2
4,872,397	+		PP_4281	0.59	-1.0
4,872,397	+		PP_4281	0.59	+1.2
4,872,398	-		PP_4281	0.59	-2.9
4,872,446	+		PP_4281	0.63	+0.6
4,872,446	+		PP_4281	0.63	+0.3
4,872,446	+		PP_4281	0.63	-1.5
4,872,447	-		PP_4281	0.63	+3.0
4,872,447	-		PP_4281	0.63	-1.2