Strain Fitness in Pseudomonas putida KT2440 around PP_4278

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
4,865,926	-				+0.3
4,865,926	-				+0.6
4,866,004	-		PP_4277	0.19	-0.4
4,866,042	+		PP_4277	0.25	-4.1
4,866,042	+		PP_4277	0.25	+0.1
4,866,042	+		PP_4277	0.25	-0.3
4,866,042	+		PP_4277	0.25	-1.9
4,866,042	+		PP_4277	0.25	+1.4
4,866,042	+		PP_4277	0.25	+0.1
4,866,042	+		PP_4277	0.25	-0.6
4,866,042	+		PP_4277	0.25	-1.4
4,866,043	-		PP_4277	0.25	+0.2
4,866,043	-		PP_4277	0.25	-2.6
4,866,043	-		PP_4277	0.25	+0.6
4,866,043	-		PP_4277	0.25	-1.2
4,866,045	+		PP_4277	0.26	+0.0
4,866,045	+		PP_4277	0.26	+0.5
4,866,045	+		PP_4277	0.26	-0.2
4,866,046	-		PP_4277	0.26	-0.4
4,866,046	-		PP_4277	0.26	+0.8
4,866,114	+		PP_4277	0.36	-1.5
4,866,115	-		PP_4277	0.36	-0.6
4,866,267	+		PP_4277	0.59	+1.0
4,866,267	+		PP_4277	0.59	+0.8
4,866,267	+		PP_4277	0.59	-0.2
4,866,267	+		PP_4277	0.59	+0.5
4,866,267	+				-0.0
4,866,267	+		PP_4277	0.59	-1.4
4,866,268	-		PP_4277	0.59	-1.0
4,866,268	-		PP_4277	0.59	-0.4
4,866,442	+		PP_4277	0.86	-0.7
4,866,489	+				-0.0
4,866,580	+				+0.7
4,866,580	+				-1.3
4,866,580	+				-0.4
4,866,580	+				+1.3
4,866,585	+				-0.3
4,866,585	+				+1.0
4,866,586	-				+0.3
4,866,586	-				-0.2
4,866,586	-				-0.4
4,866,622	+				-0.8
4,866,623	-				+0.5
4,866,660	+				-0.2
4,866,661	-				-0.3
4,866,661	-				-1.0
4,866,661	-				+1.9
4,866,661	-				-0.7
4,866,661	-				+1.6
4,866,661	-				-1.0
4,866,668	+				-0.5
4,866,668	+				+0.5
4,866,668	+				-1.4
4,866,668	+				+0.3
4,866,668	+				-1.0
4,866,669	-				+0.8
4,866,669	-				-0.9
4,866,669	-				+2.0
4,866,671	+				-0.9
4,866,672	-				+1.7
4,866,672	-				+2.0
4,866,672	-				+0.2
4,866,745	+				+1.0
4,866,746	-				-0.9
4,866,746	-				+0.5
4,866,746	-				-0.3
4,866,746	-				+0.9
4,866,760	+				+0.3
4,866,760	+				+0.3
4,866,761	-				-0.4
4,866,761	-				-1.0
4,866,780	+				+0.0
4,866,780	+				+0.5
4,866,780	+				-0.6
4,866,780	+				-0.8
4,866,836	+				+0.5
4,866,857	+				+1.5
4,866,857	+				-0.8
4,866,857	+				+0.6
4,866,857	+				-1.5
4,866,858	-				-0.8
4,866,858	-				-0.4
4,866,858	-				+0.1
4,866,858	-				-0.9
4,866,877	-				+1.5
4,866,877	-				-2.4
4,867,530	+		PP_4278	0.50	-1.1
4,867,530	+		PP_4278	0.50	+1.0
4,867,530	+		PP_4278	0.50	+0.4
4,867,531	-		PP_4278	0.50	-0.8
4,867,531	-		PP_4278	0.50	+0.3
4,867,531	-		PP_4278	0.50	-1.1
4,867,531	-		PP_4278	0.50	+1.0
4,867,531	-		PP_4278	0.50	-2.0
4,867,531	-		PP_4278	0.50	+0.3
4,867,531	-		PP_4278	0.50	-0.1
4,867,617	+		PP_4278	0.56	-2.9
4,867,639	-		PP_4278	0.57	-2.1
4,867,821	+		PP_4278	0.70	+0.1
4,867,822	-		PP_4278	0.70	-0.6
4,867,822	-		PP_4278	0.70	-0.8
4,867,918	-		PP_4278	0.77	-0.6
4,867,919	+		PP_4278	0.77	+0.6
4,867,919	+		PP_4278	0.77	-1.0
4,867,920	-		PP_4278	0.77	+0.3
4,867,920	-		PP_4278	0.77	-0.6
4,867,920	-		PP_4278	0.77	-1.4
4,868,166	+				+0.1
4,868,166	+				+0.5
4,868,203	-				+0.0
4,868,226	+				-0.4
4,868,226	+				+1.1
4,868,226	+				+0.9
4,868,227	-				-0.3
4,868,227	-				+0.5
4,868,227	-				-0.4
4,868,227	-				+1.9
4,868,250	+				+0.7
4,868,250	+				-0.2
4,868,251	-				+0.1
4,868,251	-				-0.6
4,868,257	-				-0.1
4,868,364	-				+1.1
4,868,380	+				-0.0
4,868,380	+				-1.7
4,868,381	-				-0.6
4,868,381	-				+0.6
4,868,381	-				+0.2
4,868,381	-				-0.4
4,868,381	-				-1.2
4,868,422	+				-0.9
4,868,422	+				-0.7
4,868,422	+				+0.1
4,868,422	+				-1.0
4,868,422	+				+0.2
4,868,422	+				+0.3
4,868,422	+				-3.0
4,868,422	-				-1.0
4,868,423	-				-0.4
4,868,423	-				-0.3
4,868,423	-				-1.1
4,868,423	-				-0.2
4,868,423	-				+0.5
4,868,423	-				+0.2
4,868,423	-				-0.9
4,868,431	-				-0.5
4,868,482	+				+0.6
4,868,483	-				+0.9
4,868,483	-				-0.4
4,868,502	+		PP_4279	0.10	-0.7
4,868,674	+		PP_4279	0.18	+0.7
4,868,674	+		PP_4279	0.18	-0.6
4,868,836	+		PP_4279	0.24	+0.1
4,868,837	-		PP_4279	0.24	+0.1
4,868,868	+		PP_4279	0.26	-0.1
4,868,869	-		PP_4279	0.26	-0.3
4,868,893	+		PP_4279	0.27	-0.3
4,868,893	+		PP_4279	0.27	-0.4
4,868,894	-		PP_4279	0.27	+0.5
4,868,942	+		PP_4279	0.29	-0.2
4,869,048	-		PP_4279	0.33	-0.7
4,869,134	-		PP_4279	0.37	+0.3
4,869,143	-		PP_4279	0.37	-0.1
4,869,143	-		PP_4279	0.37	-1.5