Strain Fitness in Pseudomonas putida KT2440 around PP_4274

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
4,857,721	-		PP_4272	0.61	-0.7
4,857,770	+		PP_4272	0.70	-1.1
4,857,774	+		PP_4272	0.71	+0.6
4,857,775	-		PP_4272	0.71	-0.5
4,857,775	-		PP_4272	0.71	-1.4
4,857,810	+		PP_4272	0.77	+0.1
4,857,810	+		PP_4272	0.77	-0.8
4,857,810	+		PP_4272	0.77	+1.0
4,857,811	-		PP_4272	0.78	+0.9
4,857,811	-		PP_4272	0.78	+1.2
4,857,811	-		PP_4272	0.78	-1.1
4,857,844	-		PP_4272	0.84	+1.4
4,857,858	-		PP_4272	0.86	-0.5
4,857,897	+				+0.6
4,857,897	+				-0.7
4,857,898	-				-0.2
4,857,898	-				-0.2
4,857,914	+				-0.6
4,857,915	-				+1.3
4,857,984	+				+0.8
4,857,985	-				-0.8
4,857,985	-				-0.4
4,858,005	-		PP_4273	0.13	-0.2
4,858,007	+		PP_4273	0.14	-1.0
4,858,506	-				-0.3
4,858,506	-				-0.6
4,858,506	-				+0.3
4,858,506	-				-2.7
4,858,506	-				+0.8
4,858,506	-				+0.9
4,858,506	-				+1.4
4,858,720	+				-0.5
4,858,721	-				+1.7
4,858,728	+				-1.8
4,861,187	-				+0.4
4,861,187	-				+0.1
4,861,187	-				+1.0
4,861,193	-				-1.2
4,861,193	-				+0.8
4,861,193	-				-0.4
4,861,302	-				-3.0