Strain Fitness in Pseudomonas putida KT2440 around PP_4269

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
4,852,055	+		PP_4267	0.54	-0.3
4,852,055	+		PP_4267	0.54	+0.1
4,852,055	+		PP_4267	0.54	+0.0
4,852,055	+		PP_4267	0.54	-1.9
4,852,055	+		PP_4267	0.54	-1.2
4,852,055	+		PP_4267	0.54	+0.7
4,852,056	-		PP_4267	0.55	-0.6
4,852,056	-		PP_4267	0.55	-2.7
4,852,351	+				+1.2
4,852,351	+				-1.8
4,852,364	-				-0.2
4,852,365	+				+0.1
4,852,627	+				+0.6
4,852,628	-				-1.1
4,852,628	-				+0.3
4,852,752	+		PP_4268	0.38	+2.0
4,852,753	-		PP_4268	0.38	-0.8
4,852,967	-				+0.2
4,852,967	-				-0.0
4,852,969	-				+1.1
4,852,969	-				-1.1
4,852,969	-				+0.8
4,853,027	-				-1.3
4,853,039	+				-0.3
4,853,040	-				-1.5
4,853,053	-				-0.8
4,853,063	+				-2.1
4,853,063	+				-1.2
4,853,063	+				-1.8
4,853,064	-				-3.4
4,853,064	-				-2.4
4,853,064	-				-1.6
4,853,064	-				-4.1
4,853,064	-				-0.3
4,853,064	-				-2.3
4,853,066	+				-1.2
4,853,067	-				-2.5
4,853,067	-				-2.0
4,853,067	-				-2.0
4,855,185	-				-0.8
4,855,244	+				-0.2
4,855,244	+				+0.3
4,855,245	-				+1.6
4,855,326	-		PP_4270	0.13	+0.7
4,855,363	+		PP_4270	0.17	+1.9
4,855,364	-		PP_4270	0.18	+0.1
4,855,477	+		PP_4270	0.32	-2.1
4,855,477	+		PP_4270	0.32	-1.0
4,855,478	-		PP_4270	0.32	-1.2
4,855,478	-		PP_4270	0.32	+0.9
4,855,527	+		PP_4270	0.38	-1.2
4,855,527	+		PP_4270	0.38	-0.7
4,855,527	+		PP_4270	0.38	+0.4
4,855,554	-		PP_4270	0.41	-0.4
4,855,554	-		PP_4270	0.41	+1.4
4,855,633	+		PP_4270	0.51	-0.1
4,855,639	+		PP_4270	0.52	-1.3
4,855,639	+		PP_4270	0.52	-1.0
4,855,639	+		PP_4270	0.52	-0.7
4,855,639	+		PP_4270	0.52	+1.0
4,855,639	+		PP_4270	0.52	+0.0
4,855,639	+		PP_4270	0.52	-0.2
4,855,639	+		PP_4270	0.52	-0.9
4,855,640	-		PP_4270	0.52	-1.0
4,855,640	-		PP_4270	0.52	-0.9
4,855,640	-		PP_4270	0.52	-0.5
4,855,640	-		PP_4270	0.52	-0.0
4,855,898	+		PP_4270	0.84	+0.1
4,855,898	+		PP_4270	0.84	-1.0
4,855,898	+		PP_4270	0.84	-1.4
4,855,922	+		PP_4270	0.87	-0.1
4,855,922	+		PP_4270	0.87	-1.7
4,855,922	+		PP_4270	0.87	+1.1
4,855,923	-		PP_4270	0.87	+1.5
4,855,968	+				-0.9
4,855,968	+				-0.5
4,855,968	+				+1.3
4,855,968	+				+0.0
4,855,968	+				-0.1
4,855,968	+				+0.3
4,855,968	+				-1.3
4,855,968	+				-1.0
4,855,968	+				+0.1
4,855,968	+				-0.2
4,855,969	-				+1.2
4,855,969	-				+0.2
4,855,969	-				+0.6
4,855,969	-				+0.7
4,855,969	-				+0.0
4,855,969	-				+0.3
4,855,969	-				-0.3
4,855,969	-				+0.6
4,855,969	-				+0.8
4,855,969	-				-1.8
4,855,969	-				+0.0
4,855,991	+				+2.1
4,855,992	-				+0.1
4,856,026	+				-1.1