Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4189 and PP_4190 are separated by 246 nucleotides PP_4190 and PP_4191 are separated by 11 nucleotides PP_4191 and PP_4192 are separated by 3 nucleotides PP_4192 and PP_4193 overlap by 7 nucleotides
PP_4189: PP_4189 - 2-oxoglutarate decarboxylase, thiamine-requiring E1 subunit, at 4,732,803 to 4,735,634
_4189
PP_4190: PP_4190 - succinate dehydrogenase iron-sulfur subunit, at 4,735,881 to 4,736,585
_4190
PP_4191: PP_4191 - succinate dehydrogenase flavoprotein subunit, at 4,736,597 to 4,738,369
_4191
PP_4192: PP_4192 - succinate dehydrogenase hydrophobic membrane anchor subunit, at 4,738,373 to 4,738,741
_4192
PP_4193: PP_4193 - succinate dehydrogenase membrane b-556 subunit, at 4,738,735 to 4,739,121
_4193
Position (kb)
4736
4737
4738
4739 Strain fitness (log2 ratio)
-2
-1
0
1 at 4735.783 kb on - strand at 4735.787 kb on - strand at 4735.859 kb on - strand at 4735.868 kb on - strand at 4735.868 kb on - strand at 4735.880 kb on - strand at 4739.167 kb on - strand at 4739.250 kb on - strand at 4739.258 kb on - strand at 4739.294 kb on - strand at 4739.323 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 4,735,783 - -0.4 4,735,787 - +0.7 4,735,859 - -0.6 4,735,868 - -1.8 4,735,868 - +1.5 4,735,880 - -1.8 4,739,167 - -2.4 4,739,250 - -0.6 4,739,258 - +0.2 4,739,294 - -0.0 4,739,323 + -0.9
Or see this region's nucleotide sequence