Strain Fitness in Pseudomonas putida KT2440 around PP_4186

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4185 and PP_4186 overlap by 1 nucleotidesPP_4186 and PP_4187 are separated by 171 nucleotides PP_4185: PP_4185 - succinyl-CoA synthetase alpha subunit, at 4,727,785 to 4,728,669 _4185 PP_4186: PP_4186 - succinyl-CoA synthetase, beta subunit glutaryl-CoA synthetase, beta subunit, at 4,728,669 to 4,729,835 _4186 PP_4187: PP_4187 - dihydrolipoyl dehydrogenase, at 4,730,007 to 4,731,443 _4187 Position (kb) 4728 4729 4730Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4727.679 kb on + strandat 4727.718 kb on + strandat 4727.718 kb on + strandat 4727.718 kb on + strandat 4727.719 kb on - strandat 4727.719 kb on - strandat 4727.719 kb on - strandat 4727.719 kb on - strandat 4727.731 kb on + strandat 4727.731 kb on + strandat 4727.732 kb on - strandat 4727.786 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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4,727,679 + +1.8
4,727,718 + +0.0
4,727,718 + -1.3
4,727,718 + -1.0
4,727,719 - +1.6
4,727,719 - +0.0
4,727,719 - -2.7
4,727,719 - +0.8
4,727,731 + +0.1
4,727,731 + +0.6
4,727,732 - +0.5
4,727,786 + +3.0

Or see this region's nucleotide sequence