Strain Fitness in Pseudomonas putida KT2440 around PP_4185

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
4,726,805	-		PP_4184	0.56	+1.4
4,726,843	+		PP_4184	0.59	+1.0
4,726,843	+		PP_4184	0.59	-1.5
4,726,843	+		PP_4184	0.59	+1.1
4,726,843	+		PP_4184	0.59	+0.5
4,726,844	-		PP_4184	0.59	+0.8
4,726,844	-		PP_4184	0.59	+0.7
4,726,902	+		PP_4184	0.63	+0.6
4,726,969	+		PP_4184	0.69	+1.2
4,726,969	+		PP_4184	0.69	-1.5
4,726,969	+		PP_4184	0.69	+1.6
4,726,969	+		PP_4184	0.69	-0.7
4,726,970	-		PP_4184	0.69	-0.3
4,726,999	+		PP_4184	0.71	+0.5
4,727,000	-		PP_4184	0.71	-1.4
4,727,012	-		PP_4184	0.72	+2.1
4,727,012	-		PP_4184	0.72	+0.1
4,727,117	-				-1.4
4,727,262	+				+0.4
4,727,262	+				+0.2
4,727,262	+				+0.1
4,727,262	+				+1.3
4,727,262	+				-1.8
4,727,263	-				-0.9
4,727,263	-				-0.2
4,727,263	-				-0.4
4,727,263	-				-0.2
4,727,306	+				+1.0
4,727,306	+				-0.6
4,727,306	+				+0.1
4,727,306	+				-1.2
4,727,339	+				+0.8
4,727,339	+				+0.5
4,727,383	+				-0.2
4,727,383	+				-0.3
4,727,383	+				-2.1
4,727,383	+				-0.6
4,727,384	-				+0.7
4,727,384	-				+0.1
4,727,384	-				+1.1
4,727,384	-				-1.3
4,727,384	-				-1.2
4,727,388	+				+0.6
4,727,388	+				+1.6
4,727,388	+				+1.0
4,727,389	-				-1.0
4,727,391	+				-0.0
4,727,392	-				-1.1
4,727,392	-				+0.8
4,727,392	-				+1.5
4,727,392	-				+1.4
4,727,477	+				+0.1
4,727,522	-				-0.6
4,727,526	+				+0.2
4,727,579	+				+1.1
4,727,579	+				+0.1
4,727,579	+				+0.1
4,727,579	+				+0.1
4,727,580	-				-0.3
4,727,580	-				+0.2
4,727,580	-				-0.7
4,727,615	+				+0.9
4,727,615	+				-0.8
4,727,615	+				+0.6
4,727,616	-				+0.3
4,727,616	-				-0.2
4,727,616	-				+1.3
4,727,618	+				-0.0
4,727,665	+				-0.4
4,727,665	+				-1.7
4,727,665	+				-0.4
4,727,666	-				-1.7
4,727,666	-				+1.5
4,727,679	+				+1.8
4,727,718	+				+0.0
4,727,718	+				-1.3
4,727,718	+				-1.0
4,727,719	-				+1.6
4,727,719	-				+0.0
4,727,719	-				-2.7
4,727,719	-				+0.8
4,727,731	+				+0.1
4,727,731	+				+0.6
4,727,732	-				+0.5
4,727,786	+				+3.0