Strain Fitness in Pseudomonas putida KT2440 around PP_4175

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
4,716,490	-		PP_4173	0.89	+2.3
4,716,490	-		PP_4173	0.89	+1.0
4,716,610	-				+1.0
4,716,820	+				-0.4
4,718,655	-				+1.0
4,718,670	+				-1.6
4,718,671	-				-0.1
4,718,671	-				-0.2
4,718,671	-				-1.2
4,718,750	+				+1.0
4,718,750	+				+1.6
4,718,751	-				-1.1
4,718,751	-				+0.4
4,718,751	-				+0.4
4,719,007	+		PP_4176	0.22	-2.2
4,719,007	+		PP_4176	0.22	-0.2
4,719,007	+		PP_4176	0.22	+0.7
4,719,007	+		PP_4176	0.22	+1.1
4,719,008	-		PP_4176	0.22	-0.1
4,719,008	-		PP_4176	0.22	+2.2
4,719,008	-		PP_4176	0.22	+0.8
4,719,008	-		PP_4176	0.22	+2.1
4,719,040	+		PP_4176	0.25	-0.6
4,719,040	+		PP_4176	0.25	-1.2
4,719,041	-		PP_4176	0.25	+0.4
4,719,041	-		PP_4176	0.25	+0.3
4,719,041	-		PP_4176	0.25	+1.3
4,719,053	-		PP_4176	0.26	+0.4
4,719,115	-		PP_4176	0.33	-0.2
4,719,115	-		PP_4176	0.33	+1.2
4,719,115	-		PP_4176	0.33	+0.2
4,719,156	-		PP_4176	0.37	+0.2
4,719,274	+		PP_4176	0.48	+0.6
4,719,274	+		PP_4176	0.48	+0.0
4,719,274	+		PP_4176	0.48	+0.0
4,719,275	-		PP_4176	0.48	+0.2
4,719,275	-		PP_4176	0.48	-0.4
4,719,278	+		PP_4176	0.49	+0.9
4,719,297	-		PP_4176	0.51	-1.0
4,719,297	-		PP_4176	0.51	+0.5
4,719,408	-		PP_4176	0.62	+1.2
4,719,508	+		PP_4176	0.72	+1.4
4,719,508	+		PP_4176	0.72	+0.1
4,719,508	+		PP_4176	0.72	+0.8
4,719,508	+		PP_4176	0.72	-0.2
4,719,509	-		PP_4176	0.72	-0.6
4,719,509	-		PP_4176	0.72	+1.0
4,719,512	+		PP_4176	0.72	-0.2
4,719,512	+		PP_4176	0.72	+0.4
4,719,512	+		PP_4176	0.72	-0.2
4,719,513	-		PP_4176	0.72	-1.5
4,719,526	+		PP_4176	0.73	-1.2
4,719,533	-		PP_4176	0.74	+0.0
4,719,557	-		PP_4176	0.76	-2.1
4,719,559	+		PP_4176	0.77	+1.0
4,719,559	+		PP_4176	0.77	+1.4
4,719,606	+		PP_4176	0.81	+0.8