Strain Fitness in Pseudomonas putida KT2440 around PP_4145

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
4,680,788	-				-1.0
4,680,788	-				+0.4
4,680,788	-				+1.2
4,680,835	+				-1.1
4,680,835	+				+0.7
4,680,835	+				+1.1
4,680,835	+				+0.2
4,680,835	+				-0.2
4,680,836	-				+2.7
4,680,870	+				-2.2
4,680,870	+				+0.2
4,680,891	-				+0.6
4,681,178	+		PP_4144	0.44	+1.1
4,681,332	+		PP_4144	0.64	-0.9
4,681,347	+		PP_4144	0.66	+0.3
4,681,347	+		PP_4144	0.66	+0.0
4,681,347	+		PP_4144	0.66	+0.7
4,681,347	+		PP_4144	0.66	-0.1
4,681,347	+		PP_4144	0.66	-0.8
4,681,347	+		PP_4144	0.66	-0.5
4,681,348	-		PP_4144	0.66	+0.3
4,681,348	-		PP_4144	0.66	+0.4
4,681,516	+		PP_4144	0.88	+1.4
4,681,516	+		PP_4144	0.88	+0.1
4,681,516	+		PP_4144	0.88	-0.7
4,681,611	+				-0.5
4,681,623	-				-1.2
4,681,624	+				+1.5
4,681,624	+				-2.1
4,681,625	-				+1.0
4,681,625	-				-0.9
4,681,625	-				-0.2
4,681,696	+				+0.1
4,681,702	+				+0.5
4,681,702	+				-1.1
4,681,702	+				-0.3
4,681,702	+				-1.6
4,681,703	-				-0.9
4,681,703	-				-0.4
4,681,855	+		PP_4145	0.10	-0.0
4,681,966	-		PP_4145	0.18	-2.1
4,682,057	-		PP_4145	0.24	+0.3
4,682,065	+		PP_4145	0.25	+2.0
4,682,065	+		PP_4145	0.25	-0.1
4,682,065	+		PP_4145	0.25	-0.3
4,682,066	-		PP_4145	0.25	-1.1
4,682,066	-		PP_4145	0.25	-0.5
4,682,137	+		PP_4145	0.30	-0.2
4,682,281	+		PP_4145	0.40	-0.8
4,682,281	+		PP_4145	0.40	-1.7
4,682,281	+		PP_4145	0.40	+1.0
4,682,338	+		PP_4145	0.44	+0.1
4,682,338	+		PP_4145	0.44	-0.7
4,682,339	-		PP_4145	0.44	+1.1
4,682,408	-		PP_4145	0.49	+0.9
4,682,443	+		PP_4145	0.51	-0.7
4,682,444	-		PP_4145	0.51	+0.9
4,682,444	-		PP_4145	0.51	-0.2
4,682,447	+		PP_4145	0.51	+0.3
4,682,447	+		PP_4145	0.51	-0.3
4,682,494	+		PP_4145	0.55	-0.6
4,682,494	+		PP_4145	0.55	-0.6
4,682,494	+		PP_4145	0.55	-0.5
4,682,495	-		PP_4145	0.55	-0.8
4,682,495	-		PP_4145	0.55	-2.0
4,682,530	+		PP_4145	0.57	+0.4
4,682,861	+		PP_4145	0.80	-0.4
4,683,001	+				+1.1
4,683,001	+				+0.9
4,683,002	-				-0.2
4,683,002	-				-0.9
4,683,002	-				+0.1
4,683,128	-				-0.5
4,683,128	-				-0.5
4,683,225	-				-0.8
4,683,225	-				-0.9
4,683,284	-				-2.6
4,683,284	-				+0.7
4,683,317	+				+0.5
4,683,317	+				+0.5
4,683,318	-				-0.4
4,683,318	-				+0.2
4,683,318	-				-1.0
4,683,318	-				+0.9
4,683,318	-				-0.9
4,683,322	+				+0.5
4,683,323	-				-0.6
4,683,367	-				-0.1
4,683,566	+		PP_4146	0.11	-1.4
4,683,567	-		PP_4146	0.11	+0.2
4,683,614	+		PP_4146	0.14	-0.5
4,683,615	-		PP_4146	0.14	-0.1
4,683,695	+		PP_4146	0.18	+0.5
4,683,695	+		PP_4146	0.18	+0.7
4,683,723	-		PP_4146	0.20	-1.2
4,683,851	+		PP_4146	0.27	-0.3
4,683,882	+		PP_4146	0.28	-2.1
4,683,984	-		PP_4146	0.34	-0.4
4,684,059	+		PP_4146	0.38	+0.2
4,684,060	-		PP_4146	0.38	-2.3
4,684,137	-		PP_4146	0.42	-1.6