Strain Fitness in Pseudomonas putida KT2440 around PP_4141

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
4,677,736	-		PP_4140	0.63	+0.2
4,677,736	-		PP_4140	0.63	-0.9
4,678,039	+		PP_4140	0.76	+0.1
4,678,039	+		PP_4140	0.76	-2.7
4,678,044	+		PP_4140	0.76	-0.3
4,678,044	+		PP_4140	0.76	-0.8
4,678,045	-		PP_4140	0.76	+0.1
4,678,083	+		PP_4140	0.78	-0.6
4,678,083	+		PP_4140	0.78	+1.1
4,678,083	+		PP_4140	0.78	-0.6
4,678,084	-		PP_4140	0.78	+2.4
4,678,084	-		PP_4140	0.78	-0.9
4,678,107	-		PP_4140	0.79	-0.3
4,678,146	+		PP_4140	0.81	+0.9
4,678,147	-		PP_4140	0.81	-0.6
4,678,206	+		PP_4140	0.84	+1.7
4,678,207	-		PP_4140	0.84	+0.7
4,678,349	+				+0.1
4,678,350	-				+1.2
4,678,350	-				-0.9
4,678,350	-				+1.3
4,678,569	+				-1.6
4,678,570	-				-0.2
4,678,570	-				+1.3
4,678,582	+				+0.6
4,678,614	+				+0.6
4,678,615	-				+2.0
4,678,627	+				-0.5
4,678,627	+				+1.0
4,678,627	+				+2.6
4,678,627	+				-1.3
4,678,627	+				+0.6
4,678,627	+				-0.6
4,678,628	-				-0.6
4,678,628	-				-1.0
4,678,628	-				+1.1
4,678,628	-				-0.7
4,678,628	-				-0.5
4,678,628	-				+0.9
4,678,628	-				+0.7
4,678,628	-				-0.2
4,678,628	-				-1.0
4,678,628	-				-1.6
4,678,636	+				+2.5
4,678,636	+				+0.0
4,678,666	+				-1.0
4,679,485	-				+0.0
4,679,502	-				-1.3
4,679,948	-				-2.1
4,679,959	-				+1.1
4,680,111	+		PP_4143	0.17	-2.4
4,680,112	-		PP_4143	0.17	-1.9
4,680,204	+		PP_4143	0.29	-3.2