Strain Fitness in Pseudomonas putida KT2440 around PP_4056

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
4,574,694	+		PP_4055	0.63	+1.4
4,574,695	-		PP_4055	0.63	+0.2
4,574,754	+		PP_4055	0.66	+1.6
4,574,754	+		PP_4055	0.66	+0.5
4,574,755	-		PP_4055	0.66	-1.4
4,574,755	-		PP_4055	0.66	+0.5
4,574,982	+		PP_4055	0.77	-1.4
4,575,123	+		PP_4055	0.83	+0.4
4,575,124	-		PP_4055	0.83	+0.0
4,575,124	-		PP_4055	0.83	-2.4
4,575,232	+		PP_4055	0.88	+1.5
4,575,232	+		PP_4055	0.88	-0.3
4,575,233	-		PP_4055	0.88	+0.2
4,575,332	-				-2.1
4,575,355	-				-0.5
4,575,422	+				+0.7
4,575,423	-				+0.4
4,575,423	-				-0.9
4,575,423	-				-0.7
4,575,423	-				-0.3
4,575,469	-				-0.0
4,575,506	+				-0.5
4,575,506	+				-0.7
4,575,506	+				+1.4
4,575,507	-				+0.1
4,575,507	-				-2.2
4,575,546	-				-1.0
4,575,624	+				+0.5
4,575,625	-				-0.1
4,575,625	-				+0.0
4,575,625	-				+1.8
4,575,723	+		PP_4056	0.15	+0.4
4,575,757	-		PP_4056	0.19	-0.2
4,575,757	-		PP_4056	0.19	+0.7
4,575,905	-		PP_4056	0.38	+0.4
4,575,943	+				-0.3
4,576,110	+		PP_4056	0.64	-0.9
4,576,295	+		PP_4056	0.87	-0.7
4,576,295	+		PP_4056	0.87	-1.3
4,576,296	-		PP_4056	0.87	-1.0
4,576,296	-		PP_4056	0.87	-0.8
4,576,296	-		PP_4056	0.87	-0.2
4,576,297	+		PP_4056	0.87	-0.1
4,576,297	+		PP_4056	0.87	-0.2
4,576,298	-		PP_4056	0.87	+0.0
4,576,298	-		PP_4056	0.87	-0.7
4,576,412	+				+0.1
4,576,413	-				-0.5
4,576,544	-				+0.3
4,576,544	-				+0.5
4,576,544	-				+0.5
4,576,544	-				-0.2
4,576,554	+				+0.8
4,576,586	+				-0.9
4,576,587	-				-0.2
4,576,808	+				-0.1
4,577,228	+		PP_4057	0.48	-0.9
4,577,228	+		PP_4057	0.48	-0.5
4,577,229	-		PP_4057	0.48	+0.4
4,577,271	+		PP_4057	0.52	+1.2