Strain Fitness in Pseudomonas putida KT2440 around PP_3931

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
4,433,928	-				+0.2
4,433,928	-				+1.6
4,433,928	-				-0.4
4,434,054	-		PP_3929	0.15	+1.8
4,434,073	+		PP_3929	0.22	-0.1
4,434,090	+		PP_3929	0.28	+0.0
4,434,091	-		PP_3929	0.28	-1.2
4,434,091	-		PP_3929	0.28	-1.1
4,434,092	+		PP_3929	0.29	-3.4
4,434,093	-		PP_3929	0.29	-2.2
4,434,169	-		PP_3929	0.58	-0.1
4,434,270	+				-1.3
4,434,270	+				-0.8
4,434,270	+				-0.0
4,434,271	-				+0.4
4,434,273	+				+0.1
4,434,273	+				-0.1
4,434,273	+				-0.7
4,434,273	+				+0.5
4,434,274	-				+0.5
4,434,274	-				-0.7
4,434,351	+				-0.2
4,434,395	+		PP_3930	0.10	-3.5
4,434,395	+		PP_3930	0.10	+1.1
4,434,396	-		PP_3930	0.10	-0.9
4,434,396	-				-0.2
4,434,626	+		PP_3930	0.69	-1.2
4,434,810	+				+1.1
4,434,832	+				-0.4
4,435,141	-		PP_3931	0.15	-2.5
4,435,160	+		PP_3931	0.16	-2.2
4,435,161	-		PP_3931	0.16	-2.7
4,435,335	+		PP_3931	0.25	-0.5
4,435,336	-		PP_3931	0.25	+0.2
4,435,336	-		PP_3931	0.25	+0.2
4,435,433	+		PP_3931	0.31	-0.5
4,435,447	+		PP_3931	0.31	+1.0
4,435,448	-		PP_3931	0.31	-1.0
4,435,448	-		PP_3931	0.31	-1.5
4,435,448	-		PP_3931	0.31	-0.1
4,435,532	+		PP_3931	0.36	+0.5
4,435,541	-		PP_3931	0.36	-0.1
4,435,541	-		PP_3931	0.36	+2.2
4,435,772	+		PP_3931	0.49	-1.4
4,435,773	-		PP_3931	0.49	+0.6
4,435,816	+		PP_3931	0.51	+0.2
4,435,893	+		PP_3931	0.56	-1.0
4,435,894	-		PP_3931	0.56	+1.2
4,435,894	-		PP_3931	0.56	-1.2
4,435,922	-		PP_3931	0.57	-1.2
4,436,015	+		PP_3931	0.62	-0.4
4,436,036	+		PP_3931	0.63	-1.3
4,436,139	+		PP_3931	0.69	-1.6
4,436,255	-		PP_3931	0.75	+0.0
4,436,794	+				-2.5
4,436,812	+				-0.8
4,436,812	+				+1.0
4,436,890	-				-0.0
4,436,921	+				+0.3
4,436,921	+				-0.1
4,436,922	-				-1.6
4,436,986	+		PP_3932	0.10	+1.4
4,437,203	-		PP_3932	0.25	-0.7
4,437,363	-		PP_3932	0.37	-0.3
4,437,363	-		PP_3932	0.37	-0.5
4,437,430	+		PP_3932	0.41	+1.0
4,437,430	+		PP_3932	0.41	-1.1
4,437,522	+		PP_3932	0.48	+0.8
4,437,522	+		PP_3932	0.48	-0.3
4,437,522	+		PP_3932	0.48	+0.3
4,437,522	+		PP_3932	0.48	-1.2
4,437,523	-		PP_3932	0.48	-0.3
4,437,566	+		PP_3932	0.51	-0.1
4,437,566	+		PP_3932	0.51	-1.0
4,437,566	+		PP_3932	0.51	+0.3
4,437,567	-		PP_3932	0.51	+0.8
4,437,633	-		PP_3932	0.56	-1.2