Strain Fitness in Pseudomonas putida KT2440 around PP_3839

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
4,361,993	+		PP_3837	0.30	-0.3
4,361,994	-		PP_3837	0.30	+0.1
4,361,994	-		PP_3837	0.30	+0.8
4,361,994	-		PP_3837	0.30	-2.1
4,361,994	-		PP_3837	0.30	-0.2
4,361,994	-				+0.0
4,362,089	+		PP_3837	0.53	+0.2
4,362,089	+		PP_3837	0.53	-1.6
4,362,089	+		PP_3837	0.53	-1.3
4,362,508	+				+0.3
4,362,508	+				+0.0
4,362,508	+				-0.0
4,362,509	-				+0.7
4,362,510	+				-1.4
4,362,510	+				-0.9
4,362,510	+				+1.2
4,362,510	+				+0.9
4,362,511	-				+2.2
4,362,511	-				+1.4
4,362,511	-				+0.1
4,362,548	-				-0.9
4,362,548	-				+0.2
4,362,629	+				-0.0
4,362,724	+				+0.3
4,362,724	+				-0.2
4,362,724	+				-0.4
4,362,725	-				-2.1
4,362,725	-				+1.1
4,362,725	-				+0.2
4,362,725	-				+0.5
4,362,791	+				+0.1
4,362,791	+				-0.7
4,362,791	+				+0.3
4,362,792	-				+0.1
4,362,792	-				-0.1
4,362,862	+				+0.9
4,362,862	+				+0.4
4,362,863	-				+0.5
4,362,863	-				-0.1
4,362,863	-				-1.9
4,362,863	-				+0.9
4,362,863	-				+1.1
4,362,899	-				+0.4
4,362,899	-				+1.3
4,362,958	+				+0.5
4,362,959	-				+0.0
4,363,078	+		PP_3839	0.16	+0.5
4,363,078	+		PP_3839	0.16	+0.8
4,363,078	+		PP_3839	0.16	+0.5
4,363,078	+		PP_3839	0.16	-0.3
4,363,079	-		PP_3839	0.16	+1.5
4,363,079	-		PP_3839	0.16	-0.2
4,363,094	+		PP_3839	0.18	+1.5
4,363,095	-		PP_3839	0.18	-0.0
4,363,170	+		PP_3839	0.25	+0.6
4,363,170	+		PP_3839	0.25	+0.2
4,363,171	-		PP_3839	0.25	+0.3
4,363,194	+		PP_3839	0.28	+0.0
4,363,293	+		PP_3839	0.37	-0.0
4,363,294	-		PP_3839	0.37	+0.2
4,363,365	+		PP_3839	0.45	+0.5
4,363,417	-		PP_3839	0.50	+1.6
4,363,453	-		PP_3839	0.53	-0.4
4,363,617	-		PP_3839	0.69	+2.3
4,363,718	+		PP_3839	0.79	+1.0
4,363,718	+		PP_3839	0.79	-0.1
4,363,718	+				+0.3
4,363,766	-		PP_3839	0.84	+0.8
4,363,769	+		PP_3839	0.84	+0.5
4,363,769	+		PP_3839	0.84	+1.1
4,363,769	+		PP_3839	0.84	+1.3
4,363,769	+		PP_3839	0.84	-0.3
4,363,769	+		PP_3839	0.84	+1.3
4,363,770	-		PP_3839	0.85	+0.6
4,363,909	+				-1.2
4,363,909	+				-0.9
4,363,965	+				-0.6
4,363,965	+				-1.1
4,363,966	-				+0.2
4,363,966	-				+0.3
4,363,987	+				+1.0
4,363,996	+				+0.8
4,363,996	+				-0.8
4,363,996	+				-0.7
4,363,996	+				+0.1
4,363,996	+				+1.1
4,363,997	-				-0.4
4,363,997	-				-0.2
4,363,997	-				+0.9
4,364,047	-		PP_3840	0.21	-1.0
4,364,216	-				-0.9
4,364,216	-				+1.1
4,364,216	-				+0.4
4,364,216	-				+0.3
4,364,232	-				-0.0
4,364,232	-				-0.4
4,364,255	+				+0.3
4,364,255	+				+1.7
4,364,256	-				-0.3
4,364,485	+				+0.0
4,364,485	+				+0.3
4,364,485	+				-1.4
4,364,486	-				-0.7
4,364,486	-				+0.4
4,364,486	-				+0.3
4,364,499	+				-1.3
4,364,499	+				+1.3
4,364,499	+				+1.1
4,364,499	+				-0.7
4,364,500	-				+1.3
4,364,500	-				-0.1
4,364,611	+		PP_5635	0.47	-0.7
4,364,658	+		PP_5635	0.67	-0.3
4,364,658	+		PP_5635	0.67	-2.0
4,364,658	+		PP_5635	0.67	+0.9
4,364,659	-		PP_5635	0.67	+2.2
4,364,659	-		PP_5635	0.67	-0.7
4,364,662	+		PP_5635	0.68	-0.5
4,364,662	+		PP_5635	0.68	+1.0
4,364,662	+		PP_5635	0.68	-0.3
4,364,662	+		PP_5635	0.68	+1.2
4,364,662	+		PP_5635	0.68	-1.3
4,364,663	-		PP_5635	0.69	-1.9
4,364,663	-		PP_5635	0.69	-0.4
4,364,663	-		PP_5635	0.69	+0.3
4,364,663	-		PP_5635	0.69	-0.7
4,364,663	-		PP_5635	0.69	+0.8
4,364,663	-		PP_5635	0.69	-1.2
4,364,663	-		PP_5635	0.69	-0.1
4,364,706	+		PP_5635	0.87	-0.5
4,364,777	+				+1.4
4,364,777	+				-2.2
4,364,778	-				-0.8
4,364,795	-				+0.3
4,364,795	-				+0.8
4,364,916	+		PP_3841	0.40	+0.9