Strain Fitness in Pseudomonas putida KT2440 around PP_3741

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
4,268,894	+		PP_3740	0.70	-0.2
4,268,895	-		PP_3740	0.70	-2.5
4,268,895	-		PP_3740	0.70	-0.2
4,269,231	+				-1.0
4,269,231	+				-1.6
4,269,232	-				+0.3
4,269,232	-				-0.8
4,269,232	-				+0.0
4,269,295	-				+0.5
4,269,424	+				-0.7
4,269,520	-				-2.0
4,269,524	-				+0.2
4,269,714	+				+0.6
4,269,714	+				+2.4
4,269,833	-				-0.3
4,269,978	+				-1.1
4,269,978	+				-0.2
4,269,979	-				-0.6
4,269,979	-				+0.0
4,269,979	-				+0.9
4,269,982	+				-0.1
4,269,982	+				-1.3
4,269,983	-				-0.9
4,270,094	-		PP_3741	0.12	-1.2
4,270,211	+		PP_3741	0.18	-0.7
4,270,211	+		PP_3741	0.18	-0.5
4,270,212	-		PP_3741	0.19	-1.6
4,270,212	-		PP_3741	0.19	-1.0
4,270,268	+		PP_3741	0.21	-1.1
4,270,269	-		PP_3741	0.22	-0.4
4,270,269	-		PP_3741	0.22	-2.0
4,270,399	-		PP_3741	0.28	+0.7
4,270,399	-		PP_3741	0.28	-3.5
4,270,399	-		PP_3741	0.28	-1.0
4,270,495	-		PP_3741	0.33	+0.3
4,270,495	-		PP_3741	0.33	-0.1
4,270,601	+		PP_3741	0.39	-1.4
4,270,601	+		PP_3741	0.39	-1.0
4,270,602	-		PP_3741	0.39	-0.5
4,270,602	-		PP_3741	0.39	-0.9
4,270,603	+		PP_3741	0.39	-0.5
4,270,603	+		PP_3741	0.39	+0.1
4,270,603	+		PP_3741	0.39	+0.4
4,270,603	+		PP_3741	0.39	-1.5
4,270,603	+		PP_3741	0.39	-2.0
4,270,604	-		PP_3741	0.39	-0.6
4,270,604	-		PP_3741	0.39	+0.3
4,270,604	-		PP_3741	0.39	-2.6
4,270,604	-		PP_3741	0.39	-0.9
4,270,604	-		PP_3741	0.39	-0.7
4,270,633	+		PP_3741	0.41	-0.7
4,270,678	+		PP_3741	0.43	+0.3
4,270,678	+		PP_3741	0.43	-0.5
4,270,678	+		PP_3741	0.43	+0.3
4,270,679	-		PP_3741	0.43	-0.7
4,270,679	-		PP_3741	0.43	-0.3
4,270,702	+		PP_3741	0.44	-1.2
4,270,770	+				+2.2
4,270,770	+		PP_3741	0.48	-0.7
4,270,770	+		PP_3741	0.48	-0.9
4,270,771	-		PP_3741	0.48	-1.3
4,270,830	+		PP_3741	0.51	-0.4
4,270,830	+		PP_3741	0.51	-0.1
4,270,830	+		PP_3741	0.51	+0.0
4,270,924	-		PP_3741	0.56	-0.7
4,270,926	+		PP_3741	0.56	-0.3
4,270,927	-		PP_3741	0.56	-0.5
4,270,941	+		PP_3741	0.57	-0.1
4,270,953	+		PP_3741	0.58	-0.6
4,270,953	+		PP_3741	0.58	-0.0
4,270,953	+		PP_3741	0.58	-0.6
4,270,954	-		PP_3741	0.58	-1.0
4,270,995	+		PP_3741	0.60	-0.6
4,270,995	+		PP_3741	0.60	-0.0
4,270,995	+		PP_3741	0.60	-1.1
4,270,995	+		PP_3741	0.60	-2.5
4,270,995	+				-2.0
4,270,995	+		PP_3741	0.60	+0.1
4,270,995	+		PP_3741	0.60	-1.8
4,270,996	-		PP_3741	0.60	+0.4
4,270,996	-		PP_3741	0.60	-0.3
4,270,996	-		PP_3741	0.60	+0.0
4,271,025	+		PP_3741	0.61	-2.1
4,271,026	-		PP_3741	0.61	+0.2
4,271,026	-		PP_3741	0.61	+0.1
4,271,032	-		PP_3741	0.62	-0.1
4,271,073	+		PP_3741	0.64	-1.6
4,271,073	+		PP_3741	0.64	-3.2
4,271,223	+		PP_3741	0.72	-0.6
4,271,223	+		PP_3741	0.72	-1.0
4,271,224	-		PP_3741	0.72	+0.4
4,271,224	-		PP_3741	0.72	-0.2
4,271,224	-		PP_3741	0.72	-1.9
4,271,224	-		PP_3741	0.72	-0.1
4,271,225	+		PP_3741	0.72	+0.6
4,271,325	-		PP_3741	0.77	-0.9
4,271,520	+		PP_3741	0.88	-1.2
4,271,520	+		PP_3741	0.88	-0.3
4,271,520	+		PP_3741	0.88	-1.2
4,271,521	-		PP_3741	0.88	-2.3
4,271,612	-				-1.0
4,271,679	+				+0.5
4,271,679	+				-2.6
4,271,679	+				-0.6
4,271,679	+				-1.7
4,271,679	+				+0.3
4,271,680	-				-1.2
4,271,680	-				-1.0
4,271,827	+				-2.4
4,271,828	-				+0.9
4,271,930	-		PP_3742	0.21	+0.4
4,272,009	-		PP_3742	0.33	-0.5
4,272,009	-		PP_3742	0.33	+1.3
4,272,014	-		PP_3742	0.34	+0.3
4,272,100	+		PP_3742	0.48	-2.5
4,272,101	-		PP_3742	0.48	-0.0
4,272,103	+		PP_3742	0.48	-0.2
4,272,103	+		PP_3742	0.48	-0.5
4,272,104	-		PP_3742	0.49	+0.6
4,272,104	-		PP_3742	0.49	+0.3
4,272,104	-		PP_3742	0.49	+0.3
4,272,104	-		PP_3742	0.49	-1.0
4,272,116	+		PP_3742	0.51	-2.2
4,272,116	+		PP_3742	0.51	+0.8
4,272,380	-				-0.7
4,272,380	-				+1.3
4,272,380	-				-2.8
4,272,633	+				+0.0
4,272,633	+				-1.4
4,272,655	+				-0.2
4,272,656	-				+0.1
4,272,672	-				-0.4
4,272,672	-				-0.3
4,272,692	-				+2.1
4,272,717	+				+0.5
4,272,718	-				+0.9
4,272,718	-				-0.3