Strain Fitness in Pseudomonas putida KT2440 around PP_3684

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
4,187,142	+		PP_3683	0.39	-0.1
4,187,143	-		PP_3683	0.39	+2.0
4,187,160	-		PP_3683	0.41	-0.1
4,187,200	+		PP_3683	0.44	+0.3
4,187,201	-		PP_3683	0.44	-0.1
4,187,258	+		PP_3683	0.49	+1.6
4,187,287	-		PP_3683	0.51	-0.5
4,187,298	+		PP_3683	0.52	+0.4
4,187,298	+		PP_3683	0.52	+0.9
4,187,298	+		PP_3683	0.52	+1.3
4,187,299	-		PP_3683	0.52	-1.7
4,187,362	+		PP_3683	0.57	-1.2
4,187,363	-		PP_3683	0.57	-0.9
4,187,376	+		PP_3683	0.58	-0.4
4,187,397	-		PP_3683	0.60	-0.7
4,187,397	-		PP_3683	0.60	+0.4
4,187,451	+		PP_3683	0.64	-0.8
4,187,451	+		PP_3683	0.64	+0.4
4,187,451	+		PP_3683	0.64	-0.1
4,187,451	+		PP_3683	0.64	+0.0
4,187,451	+		PP_3683	0.64	+1.2
4,187,451	+		PP_3683	0.64	+0.0
4,187,452	-		PP_3683	0.64	+0.3
4,187,452	-				+1.5
4,187,452	-		PP_3683	0.64	+0.5
4,187,452	-		PP_3683	0.64	+0.0
4,187,479	+		PP_3683	0.66	+1.0
4,187,480	-		PP_3683	0.67	-0.2
4,187,515	-		PP_3683	0.69	+0.3
4,187,515	-		PP_3683	0.69	-0.3
4,187,629	+		PP_3683	0.79	+0.4
4,187,684	+		PP_3683	0.83	+1.7
4,187,768	+		PP_3683	0.90	-0.8
4,187,768	+		PP_3683	0.90	+0.4
4,187,768	+		PP_3683	0.90	-1.2
4,187,768	+		PP_3683	0.90	-1.2
4,187,774	+				+0.2
4,187,809	-				-0.1
4,187,824	+				+1.3
4,187,824	+				-0.5
4,187,825	-				-0.9
4,187,825	-				+2.9
4,187,825	-				+1.5
4,187,825	-				-0.1
4,187,825	-				+3.2
4,187,825	-				+1.0
4,187,828	+				+0.8
4,187,828	+				-1.3
4,187,829	-				+0.1
4,187,852	+				+1.2
4,187,853	-				-0.1
4,187,893	+				-1.7
4,187,894	-				+1.0
4,187,975	-				+0.2
4,187,975	-				+1.3
4,187,989	+				+1.0
4,187,990	-				+1.1
4,188,060	+				-0.9
4,188,061	-				+0.9
4,188,061	-				+0.1
4,188,061	-				+2.7
4,188,065	-				-0.0
4,188,065	-				-0.9
4,188,065	-				-1.1
4,188,074	+				+0.2
4,188,127	+				-0.6
4,188,155	-		PP_3684	0.17	-2.6
4,188,183	+		PP_3684	0.26	-1.4
4,188,183	+		PP_3684	0.26	-1.3
4,188,184	-		PP_3684	0.26	-0.2
4,188,199	-		PP_3684	0.31	-0.7
4,188,232	+		PP_3684	0.42	+0.6
4,188,233	-		PP_3684	0.43	-1.5
4,188,325	+		PP_3684	0.73	-1.9
4,188,326	-		PP_3684	0.74	-0.5
4,188,326	-		PP_3684	0.74	-0.8
4,188,326	-		PP_3684	0.74	-0.5
4,188,495	-				+0.3
4,188,647	+				+0.2
4,188,648	-				+0.1
4,188,812	-				+0.5
4,188,846	+		PP_5611	0.13	-1.8
4,188,876	+		PP_5611	0.17	-1.2
4,188,927	+		PP_5611	0.23	+1.8
4,188,928	-		PP_5611	0.23	-0.2
4,188,928	-		PP_5611	0.23	+0.1
4,189,006	-		PP_5611	0.33	-0.1
4,189,006	-		PP_5611	0.33	-0.5
4,189,084	+		PP_5611	0.42	+1.2
4,189,101	+		PP_5611	0.44	+0.2
4,189,122	+		PP_5611	0.47	+0.2
4,189,122	+		PP_5611	0.47	+0.2
4,189,122	+		PP_5611	0.47	-1.3
4,189,123	-				+1.3
4,189,123	-		PP_5611	0.47	+0.1
4,189,123	-		PP_5611	0.47	-2.0
4,189,123	-		PP_5611	0.47	-0.2
4,189,123	-		PP_5611	0.47	-1.5
4,189,124	+		PP_5611	0.47	+0.4
4,189,125	-		PP_5611	0.47	+0.2
4,189,163	+		PP_5611	0.52	-0.4
4,189,164	-		PP_5611	0.52	+0.3
4,189,220	+		PP_5611	0.59	+0.2
4,189,242	+		PP_5611	0.62	+0.1
4,189,242	+		PP_5611	0.62	-1.0
4,189,243	-		PP_5611	0.62	-1.1
4,189,243	-		PP_5611	0.62	+0.0
4,189,243	-		PP_5611	0.62	+0.7
4,189,341	-		PP_5611	0.74	+0.0
4,189,392	+		PP_5611	0.80	+0.8
4,189,392	+		PP_5611	0.80	-1.7
4,189,393	-		PP_5611	0.80	+1.3
4,189,393	-		PP_5611	0.80	-0.4
4,189,393	-		PP_5611	0.80	+0.5
4,189,393	-		PP_5611	0.80	+1.9