Strain Fitness in Pseudomonas putida KT2440 around PP_3550

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
4,024,846	-		PP_3549	0.29	+0.7
4,024,863	+		PP_3549	0.30	-0.5
4,024,864	-		PP_3549	0.30	-0.9
4,025,012	-		PP_3549	0.42	+0.1
4,025,012	-		PP_3549	0.42	+0.2
4,025,026	-		PP_3549	0.44	+0.7
4,025,435	+		PP_3549	0.78	-0.1
4,025,435	+		PP_3549	0.78	-0.7
4,025,435	+		PP_3549	0.78	-0.1
4,025,483	-		PP_3549	0.82	+0.8
4,025,532	+		PP_3549	0.86	-0.1
4,025,533	-		PP_3549	0.86	-1.0
4,025,574	+		PP_3549	0.90	-1.1
4,025,704	+				-0.9
4,025,705	-				+1.1
4,025,705	-				-1.3
4,025,705	-				+0.0
4,025,714	-				+1.3
4,025,722	-				+0.3
4,026,049	-		PP_3550	0.68	-1.6
4,026,242	+				-0.8
4,026,243	-				-0.9
4,026,250	+				+0.3
4,026,250	+				+0.9
4,026,250	+				-0.3
4,026,277	-				+0.6
4,026,373	-				+0.9
4,026,562	-		PP_3551	0.29	-0.9
4,026,698	-		PP_3551	0.50	-2.5
4,026,994	+				-0.5
4,026,995	-				+0.3
4,026,995	-				-0.5
4,027,025	-				+0.2
4,027,167	-		PP_3552	0.10	-2.8