Strain Fitness in Pseudomonas putida KT2440 around PP_3362

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,803,331	+		PP_3361	0.81	+1.1
3,803,338	+		PP_3361	0.81	-0.2
3,803,339	-		PP_3361	0.81	+0.2
3,803,339	-		PP_3361	0.81	+0.9
3,803,437	+		PP_3361	0.84	-0.9
3,803,438	-		PP_3361	0.84	-0.7
3,803,776	+				-1.8
3,803,776	+				-0.2
3,803,776	+				-0.6
3,803,777	-				+0.9
3,803,796	-				-0.1
3,803,916	+				+1.3
3,803,916	+				-0.1
3,803,917	-				-1.3
3,803,917	-				-0.2
3,803,917	-				+0.4
3,803,952	+				+1.1
3,803,953	-				-1.5
3,803,988	+				-0.2
3,803,989	-				+1.0
3,804,100	+				+0.7
3,804,148	+		PP_3362	0.20	+2.3
3,804,149	-		PP_3362	0.20	-0.3
3,804,239	-		PP_3362	0.41	+0.5
3,804,254	-		PP_3362	0.44	+0.2
3,804,452	+		PP_3362	0.89	+0.6
3,804,452	+		PP_3362	0.89	+1.3
3,804,452	+		PP_3362	0.89	+1.5
3,804,453	-		PP_3362	0.89	+0.2
3,804,501	+				-0.1
3,804,502	-				-0.6
3,804,502	-				-0.4
3,804,516	+				+1.4
3,804,699	+		PP_3363	0.26	-0.3
3,804,907	+		PP_3363	0.59	+0.4
3,804,907	+		PP_3363	0.59	-0.9
3,804,907	+		PP_3363	0.59	+0.4
3,804,908	-		PP_3363	0.59	-1.7
3,804,908	-		PP_3363	0.59	-0.7
3,804,908	-				+3.0
3,805,166	+				-1.1
3,805,190	-				+0.8
3,805,205	-				-0.3
3,805,235	-				-1.0
3,805,243	-				+0.2
3,805,326	-				+1.1
3,805,391	+				+2.3
3,805,391	+				-0.4
3,805,391	+				+0.2
3,805,391	+				+0.1
3,805,391	+				+0.1
3,805,392	-				+0.6
3,805,404	+				+1.3
3,805,404	+				+0.1