Strain Fitness in Pseudomonas putida KT2440 around PP_3360

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,798,726	+		PP_3358	0.79	-0.0
3,798,889	+				-0.4
3,798,890	-				+0.6
3,798,890	-				+0.7
3,798,890	-				-0.8
3,799,056	+				-0.2
3,799,056	+				+1.8
3,799,070	-				-0.3
3,799,102	+				+1.4
3,799,102	+				-0.7
3,799,102	+				+1.1
3,799,115	-				+1.3
3,799,219	+		PP_3359	0.26	-0.9
3,799,219	+		PP_3359	0.26	+0.2
3,799,220	-		PP_3359	0.26	-1.5
3,799,662	-				+0.2
3,799,662	-				-0.9
3,799,844	+		PP_3360	0.16	-1.4
3,800,124	-		PP_3360	0.41	-0.6
3,800,221	-		PP_3360	0.49	-0.7
3,800,413	+		PP_3360	0.66	+0.5
3,800,413	+		PP_3360	0.66	-0.5
3,800,504	+		PP_3360	0.74	+1.4
3,800,504	+		PP_3360	0.74	-0.0
3,800,505	-		PP_3360	0.75	+0.5
3,800,596	+		PP_3360	0.83	-1.1
3,800,596	+		PP_3360	0.83	-0.9
3,800,597	-		PP_3360	0.83	-0.8
3,800,617	+		PP_3360	0.85	-0.7
3,800,617	+		PP_3360	0.85	-1.1
3,800,617	+		PP_3360	0.85	+0.1
3,800,617	+		PP_3360	0.85	+0.5
3,800,626	+		PP_3360	0.85	-1.2
3,800,626	+		PP_3360	0.85	-0.5
3,800,626	+		PP_3360	0.85	-0.6
3,800,626	+		PP_3360	0.85	-0.8
3,800,819	-				+0.2
3,801,162	-				+1.4
3,801,162	-				-0.4
3,801,162	-				-0.1
3,801,261	+		PP_3361	0.13	+1.3
3,801,261	+		PP_3361	0.13	-0.2
3,801,317	-		PP_3361	0.15	-1.7
3,801,479	+		PP_3361	0.20	+0.9
3,801,480	-		PP_3361	0.20	-1.3
3,801,480	-		PP_3361	0.20	+0.4
3,801,495	-		PP_3361	0.21	+0.4
3,801,653	+		PP_3361	0.26	-0.6
3,801,653	+		PP_3361	0.26	-0.9
3,801,653	+		PP_3361	0.26	+0.4
3,801,656	+		PP_3361	0.26	+1.0
3,801,656	+		PP_3361	0.26	+0.9
3,801,657	-		PP_3361	0.26	+0.7
3,801,657	-		PP_3361	0.26	-0.3
3,801,657	-		PP_3361	0.26	+2.6
3,801,657	-		PP_3361	0.26	+0.6
3,801,657	-		PP_3361	0.26	-0.1
3,801,681	-		PP_3361	0.27	+0.3
3,801,719	+		PP_3361	0.28	-0.3
3,801,719	+		PP_3361	0.28	-0.8
3,801,720	-		PP_3361	0.28	+0.5
3,801,720	-		PP_3361	0.28	+0.2
3,801,720	-		PP_3361	0.28	-1.7
3,801,725	+		PP_3361	0.28	-1.5
3,801,725	+		PP_3361	0.28	-0.4
3,801,725	+		PP_3361	0.28	+0.2
3,801,726	-		PP_3361	0.28	+0.2
3,801,726	-		PP_3361	0.28	-0.0
3,801,726	-		PP_3361	0.28	-0.4