Strain Fitness in Pseudomonas putida KT2440 around PP_3357

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,795,577	-		PP_3356	0.53	-1.2
3,795,577	-		PP_3356	0.53	+1.3
3,795,595	-		PP_3356	0.54	-1.0
3,795,595	-		PP_3356	0.54	-0.6
3,795,595	-		PP_3356	0.54	+2.6
3,795,866	+		PP_3356	0.69	+0.4
3,795,866	+		PP_3356	0.69	+0.2
3,795,866	+		PP_3356	0.69	-1.9
3,795,866	+		PP_3356	0.69	+0.1
3,795,866	+		PP_3356	0.69	+0.0
3,795,866	+		PP_3356	0.69	-1.1
3,795,867	-		PP_3356	0.69	+0.1
3,795,867	-		PP_3356	0.69	-0.2
3,795,867	-		PP_3356	0.69	-0.3
3,795,867	-		PP_3356	0.69	-0.2
3,795,867	-		PP_3356	0.69	-0.0
3,795,867	-		PP_3356	0.69	+1.0
3,795,867	-		PP_3356	0.69	+1.0
3,795,867	-		PP_3356	0.69	-0.8
3,795,867	-		PP_3356	0.69	-0.1
3,795,868	+		PP_3356	0.69	+1.4
3,795,868	+		PP_3356	0.69	+0.5
3,795,868	+		PP_3356	0.69	+0.9
3,795,869	-		PP_3356	0.69	-3.5
3,796,060	-		PP_3356	0.79	-0.3
3,796,060	-		PP_3356	0.79	+1.1
3,796,074	+		PP_3356	0.80	+0.3
3,796,074	+		PP_3356	0.80	+0.1
3,796,074	+		PP_3356	0.80	+0.4
3,796,074	+		PP_3356	0.80	-2.4
3,796,074	+		PP_3356	0.80	-0.3
3,796,075	-		PP_3356	0.80	+0.1
3,796,075	-		PP_3356	0.80	-0.1
3,796,160	+		PP_3356	0.84	-0.7
3,796,206	+		PP_3356	0.87	+0.9
3,796,207	-		PP_3356	0.87	+2.2
3,796,207	-		PP_3356	0.87	-0.9
3,796,207	-		PP_3356	0.87	+0.9
3,796,478	+				+0.3
3,796,478	+				-1.3
3,796,478	+				+0.3
3,796,479	-				+0.5
3,796,701	-		PP_3357	0.11	-1.1
3,796,836	+		PP_3357	0.20	-1.5
3,796,837	-		PP_3357	0.20	-0.0
3,797,109	-		PP_3357	0.39	-1.0
3,797,164	+		PP_3357	0.43	-1.6
3,797,165	-		PP_3357	0.43	-0.0
3,797,165	-		PP_3357	0.43	+0.0
3,797,704	+		PP_3357	0.80	+0.4
3,798,018	-				+0.3
3,798,018	-				-0.0
3,798,018	-				-0.7
3,798,079	+				-0.4
3,798,190	+		PP_3358	0.15	+0.9
3,798,391	+		PP_3358	0.39	+0.1
3,798,391	+		PP_3358	0.39	+0.9
3,798,391	+		PP_3358	0.39	+1.9
3,798,391	+		PP_3358	0.39	+0.9
3,798,391	+		PP_3358	0.39	-1.0
3,798,391	+		PP_3358	0.39	-0.3
3,798,391	+		PP_3358	0.39	-1.6
3,798,391	+		PP_3358	0.39	+0.2
3,798,391	+		PP_3358	0.39	+1.3
3,798,392	-		PP_3358	0.39	-1.5
3,798,392	-		PP_3358	0.39	+1.4
3,798,394	+		PP_3358	0.39	+1.3
3,798,395	-		PP_3358	0.39	-0.1
3,798,586	+		PP_3358	0.62	+0.3
3,798,587	-		PP_3358	0.62	-1.1
3,798,726	+		PP_3358	0.79	-0.0
3,798,889	+				-0.4
3,798,890	-				+0.6
3,798,890	-				+0.7
3,798,890	-				-0.8