Strain Fitness in Pseudomonas putida KT2440 around PP_3325

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,759,997	+		PP_3324	0.65	-0.6
3,759,997	+		PP_3324	0.65	-1.6
3,759,998	-		PP_3324	0.65	-1.4
3,759,998	-		PP_3324	0.65	+0.4
3,759,998	-		PP_3324	0.65	-1.2
3,759,998	-		PP_3324	0.65	-3.3
3,759,998	-		PP_3324	0.65	+0.3
3,760,032	+		PP_3324	0.68	-1.2
3,760,193	-		PP_3324	0.85	-1.6
3,760,367	+				-1.5
3,760,537	+				+2.8
3,760,609	+				-0.6
3,760,610	-				+1.2
3,760,610	-				+1.9
3,760,610	-				+1.0
3,760,627	+				-0.1
3,760,629	+				-0.2
3,760,651	-				+0.0
3,760,835	+				+1.9
3,760,863	-		PP_3325	0.10	+0.2
3,760,863	-		PP_3325	0.10	-0.7
3,760,983	+		PP_3325	0.16	+1.6
3,760,983	+		PP_3325	0.16	-0.9
3,760,984	-				-1.1
3,760,984	-		PP_3325	0.16	+0.5
3,761,016	+		PP_3325	0.17	-0.2
3,761,016	+		PP_3325	0.17	-0.7
3,761,017	-		PP_3325	0.17	+0.2
3,761,049	+		PP_3325	0.19	-2.5
3,761,049	+		PP_3325	0.19	-1.6
3,761,049	+		PP_3325	0.19	-0.3
3,761,050	-		PP_3325	0.19	+0.4
3,761,050	-		PP_3325	0.19	+0.5
3,761,116	-		PP_3325	0.22	-0.7
3,761,432	+		PP_3325	0.37	+1.0
3,761,586	+		PP_3325	0.45	-0.4
3,761,587	-		PP_3325	0.45	-0.5
3,761,587	-		PP_3325	0.45	-1.8
3,761,659	-		PP_3325	0.48	-0.6
3,761,772	+		PP_3325	0.54	+0.4
3,761,772	+		PP_3325	0.54	-1.0
3,761,790	+		PP_3325	0.54	-0.8
3,761,817	+		PP_3325	0.56	+0.9
3,761,832	+		PP_3325	0.56	+1.6
3,761,832	+		PP_3325	0.56	+0.2
3,761,832	+		PP_3325	0.56	+1.0
3,761,833	-		PP_3325	0.56	+0.2
3,761,833	-		PP_3325	0.56	-1.3
3,761,833	-		PP_3325	0.56	+0.4
3,761,843	-		PP_3325	0.57	+1.1
3,762,064	-		PP_3325	0.67	-0.8
3,762,147	+		PP_3325	0.71	-0.4
3,762,147	+				-1.2
3,762,147	+		PP_3325	0.71	-0.2
3,762,148	-		PP_3325	0.71	+0.9
3,762,148	-		PP_3325	0.71	+0.9
3,762,372	+		PP_3325	0.82	-0.4
3,762,372	+		PP_3325	0.82	+0.3
3,762,444	-		PP_3325	0.86	+0.1
3,762,468	+		PP_3325	0.87	+1.1
3,762,522	+		PP_3325	0.89	-0.9
3,762,522	+		PP_3325	0.89	+0.9
3,762,523	-		PP_3325	0.89	+0.4
3,762,523	-		PP_3325	0.89	+0.5
3,762,573	+				-0.2
3,762,574	-				+2.1
3,762,600	+				-0.8
3,762,600	+				+1.8
3,762,600	+				+0.4
3,762,601	-				+0.2
3,762,660	+				-2.3
3,762,661	-				+0.3
3,762,661	-				-0.5
3,762,663	+				-1.0
3,762,664	-				-0.2
3,762,721	+				+0.5
3,762,722	-				+0.6
3,762,722	-				+0.1
3,762,893	+		PP_3326	0.19	-0.0
3,762,894	-		PP_3326	0.19	+0.0
3,762,997	+		PP_3326	0.33	+0.5
3,762,997	+		PP_3326	0.33	-0.2
3,762,998	-		PP_3326	0.33	+2.2
3,763,140	-		PP_3326	0.53	-0.9
3,763,245	+		PP_3326	0.67	+1.5
3,763,245	+		PP_3326	0.67	-0.8
3,763,273	+		PP_3326	0.71	+1.6
3,763,349	-		PP_3326	0.82	-0.3
3,763,349	-		PP_3326	0.82	-0.4
3,763,349	-		PP_3326	0.82	+0.5
3,763,351	+		PP_3326	0.82	+0.9
3,763,352	-		PP_3326	0.82	+1.0
3,763,479	-				-0.5
3,763,483	+				+1.5
3,763,484	-				+1.0
3,763,484	-				+0.6
3,763,484	-				-1.2
3,763,484	-				+0.4
3,763,493	-				+0.5
3,763,493	-				-0.2
3,763,493	-				+0.4
3,763,515	+				-1.6
3,763,515	+				-1.7
3,763,629	-				+1.0
3,763,629	-				-1.0
3,763,629	-				+0.8
3,763,683	+				-0.8
3,763,683	+				+0.1
3,763,684	-				+0.4
3,763,684	-				-0.2
3,763,712	-				+0.2