Strain Fitness in Pseudomonas putida KT2440 around PP_3268

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,701,190	+		PP_3266	0.71	+1.5
3,701,335	+		PP_3266	0.85	-0.4
3,701,336	-		PP_3266	0.85	-0.4
3,701,627	+				+0.4
3,701,627	+				-0.2
3,701,628	-				-0.9
3,701,628	-				-0.2
3,701,628	-				+0.6
3,701,773	-		PP_3267	0.34	+1.8
3,701,773	-		PP_3267	0.34	-1.7
3,701,807	+		PP_3267	0.40	-0.1
3,701,843	+		PP_3267	0.46	+0.7
3,701,974	-		PP_3267	0.68	+0.3
3,701,989	-		PP_3267	0.70	-0.5
3,701,989	-		PP_3267	0.70	+0.4
3,702,040	+		PP_3267	0.79	+0.1
3,702,041	-		PP_3267	0.79	+0.9
3,702,052	+		PP_3267	0.81	-0.4
3,702,052	+		PP_3267	0.81	-1.5
3,702,053	-		PP_3267	0.81	+0.5
3,702,053	-		PP_3267	0.81	-2.1
3,702,053	-		PP_3267	0.81	-0.0
3,702,053	-		PP_3267	0.81	+0.5
3,702,166	-				+1.7
3,702,338	+		PP_3268	0.42	+0.4
3,702,338	+		PP_3268	0.42	-0.8
3,702,339	-		PP_3268	0.43	-1.4
3,702,339	-		PP_3268	0.43	+0.9
3,702,394	+		PP_3268	0.56	+0.3
3,702,435	+		PP_3268	0.67	+1.9
3,702,435	+		PP_3268	0.67	+0.4
3,702,435	+		PP_3268	0.67	+0.9
3,702,435	+		PP_3268	0.67	+0.0
3,702,435	+		PP_3268	0.67	+1.2
3,702,435	+		PP_3268	0.67	-0.6
3,702,435	+		PP_3268	0.67	+0.5
3,702,435	+		PP_3268	0.67	-0.6
3,702,435	+		PP_3268	0.67	+0.3
3,702,436	-		PP_3268	0.67	-0.1
3,702,436	-		PP_3268	0.67	+1.3
3,702,436	-		PP_3268	0.67	+0.4
3,702,436	-		PP_3268	0.67	+2.6
3,702,436	-				+1.6
3,702,436	-		PP_3268	0.67	+0.5
3,702,436	-		PP_3268	0.67	-0.9
3,702,436	-		PP_3268	0.67	+0.1
3,702,496	+		PP_3268	0.82	+0.7
3,702,497	-		PP_3268	0.82	+1.1
3,702,621	+				-0.0
3,702,621	+				+1.1
3,702,686	+				-0.7
3,702,750	+				-0.3
3,702,750	+				-0.1
3,702,751	-				-0.4
3,702,751	-				-3.8
3,702,751	-				-1.9
3,702,863	-		PP_3269	0.42	-1.7
3,703,042	+				+0.1
3,703,042	+				-0.1
3,703,042	+				+2.6
3,703,043	-				+0.0
3,703,043	-				-0.4
3,703,043	-				-0.8
3,703,182	+				+0.7
3,703,182	+				-0.5
3,703,182	+				+0.7
3,703,195	+				-0.4
3,703,195	+				-0.5
3,703,195	+				+0.6
3,703,196	-				-0.5
3,703,196	-				-0.1
3,703,196	-				+0.0
3,703,196	-				-0.3
3,703,208	-		PP_5596	0.11	-0.8
3,703,507	-				+0.1
3,703,507	-				-0.9
3,703,520	+				-0.6
3,703,521	-				-0.2
3,703,521	-				+1.2
3,703,521	-				+0.9
3,703,521	-				+0.1