Strain Fitness in Pseudomonas putida KT2440 around PP_3196

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,624,670	+		PP_3195	0.35	+0.9
3,624,747	+		PP_3195	0.41	+1.3
3,625,066	+		PP_3195	0.67	-0.8
3,625,121	-		PP_3195	0.71	+1.2
3,625,121	-		PP_3195	0.71	-1.4
3,625,121	-		PP_3195	0.71	+1.0
3,625,123	+		PP_3195	0.71	-0.7
3,625,123	+		PP_3195	0.71	+0.9
3,625,123	+		PP_3195	0.71	+0.1
3,625,124	-		PP_3195	0.71	-1.0
3,625,124	-		PP_3195	0.71	-0.5
3,625,124	-		PP_3195	0.71	+0.1
3,625,124	-		PP_3195	0.71	-0.3
3,625,124	-		PP_3195	0.71	-1.2
3,625,124	-		PP_3195	0.71	+0.7
3,625,124	-		PP_3195	0.71	+0.9
3,625,124	-		PP_3195	0.71	+1.5
3,625,224	+		PP_3195	0.79	-1.2
3,625,224	+		PP_3195	0.79	-0.1
3,625,357	+		PP_3195	0.90	+0.3
3,625,357	+		PP_3195	0.90	+0.6
3,625,357	+		PP_3195	0.90	+1.1
3,625,358	-		PP_3195	0.90	+1.0
3,625,372	+				-1.6
3,625,462	-				-0.9
3,625,462	-				-1.2
3,625,692	+		PP_3196	0.14	-0.8
3,625,746	-		PP_3196	0.19	-0.2
3,625,746	-		PP_3196	0.19	-0.8
3,625,746	-		PP_3196	0.19	+2.3
3,625,746	-		PP_3196	0.19	-0.0
3,625,783	+		PP_3196	0.23	+1.1
3,625,856	+		PP_3196	0.31	+0.1
3,625,910	-		PP_3196	0.37	+1.5
3,625,934	+		PP_3196	0.39	+1.1
3,625,934	+		PP_3196	0.39	+0.0
3,625,934	+		PP_3196	0.39	+1.7
3,625,934	+		PP_3196	0.39	+1.4
3,625,935	-		PP_3196	0.40	+0.7
3,626,039	+		PP_3196	0.51	+1.4
3,626,039	+		PP_3196	0.51	+2.4
3,626,040	-		PP_3196	0.51	+0.9
3,626,124	+		PP_3196	0.60	+0.4
3,626,125	-		PP_3196	0.60	+0.4
3,626,170	+		PP_3196	0.65	-1.3
3,626,186	+		PP_3196	0.66	+1.0
3,626,394	+		PP_3196	0.88	-1.7
3,626,508	+				-0.7
3,626,508	+				+1.0
3,626,508	+				-0.9
3,626,508	+				-0.2
3,626,509	-				+0.1
3,626,509	-				+0.9
3,626,509	-				-0.5
3,626,524	+				+0.0
3,626,525	-				+1.0
3,626,529	-				-0.6
3,626,561	+				-0.3
3,626,561	+				+1.2
3,626,585	+				-1.4
3,626,625	-				+2.2
3,626,705	-				-0.6
3,626,755	-				-1.8
3,626,775	-				+0.1
3,626,784	+				-0.5
3,626,785	-				-0.9
3,626,785	-				+1.3
3,626,785	-				-0.7
3,626,855	-				-0.3
3,626,925	+		PP_3197	0.15	-1.0
3,627,163	-		PP_3197	0.41	-0.3
3,627,163	-		PP_3197	0.41	-0.5
3,627,259	+		PP_3197	0.51	-0.7
3,627,259	+		PP_3197	0.51	+0.5
3,627,441	+		PP_3197	0.70	+0.8