Strain Fitness in Pseudomonas putida KT2440 around PP_3189

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,617,325	+		PP_3188	0.30	-1.7
3,617,637	+		PP_3188	0.56	+0.8
3,617,637	+		PP_3188	0.56	-1.0
3,617,638	-		PP_3188	0.57	+0.1
3,617,699	+		PP_3188	0.62	+0.8
3,617,699	+		PP_3188	0.62	-0.2
3,617,699	+		PP_3188	0.62	-0.2
3,617,700	-		PP_3188	0.62	-0.2
3,617,700	-		PP_3188	0.62	+0.5
3,617,700	-		PP_3188	0.62	+0.1
3,617,808	-		PP_3188	0.71	-0.6
3,617,833	-		PP_3188	0.73	-0.0
3,617,833	-		PP_3188	0.73	+1.1
3,617,833	-		PP_3188	0.73	-0.3
3,617,852	-		PP_3188	0.75	+1.5
3,617,944	+		PP_3188	0.83	-0.5
3,617,945	-		PP_3188	0.83	-1.3
3,618,111	+				-0.4
3,618,112	-				+0.2
3,618,143	+				+3.0
3,618,143	+				-0.3
3,618,144	-				+1.6
3,618,144	-				-1.3
3,618,365	+		PP_3189	0.17	-0.7
3,618,366	-		PP_3189	0.17	+0.7
3,618,622	-		PP_3189	0.38	-0.3
3,618,894	+		PP_3189	0.60	-1.2
3,618,894	+		PP_3189	0.60	-1.6
3,618,912	+		PP_3189	0.61	+0.1
3,618,913	-		PP_3189	0.61	-0.1
3,619,002	+		PP_3189	0.69	+0.2
3,619,095	+		PP_3189	0.76	-0.8
3,619,116	-		PP_3189	0.78	-0.8
3,619,116	-		PP_3189	0.78	-2.1
3,619,164	+		PP_3189	0.82	+0.1
3,619,243	+		PP_3189	0.88	-0.1
3,619,243	+		PP_3189	0.88	-0.7
3,619,244	-		PP_3189	0.88	-0.7
3,619,294	-				+0.2
3,619,482	+				-0.2
3,619,482	+				-0.2
3,619,702	-		PP_3190	0.31	+0.6
3,619,847	+		PP_3190	0.47	-0.2
3,620,135	+		PP_3190	0.77	-0.6