Strain Fitness in Pseudomonas putida KT2440 around PP_3183

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,608,277	+		PP_3182	0.63	-0.6
3,608,278	-		PP_3182	0.63	+1.1
3,608,335	+		PP_3182	0.65	+1.2
3,608,335	+		PP_3182	0.65	-0.1
3,608,446	+		PP_3182	0.70	+0.4
3,608,447	-		PP_3182	0.70	+1.3
3,608,738	+		PP_3182	0.83	-1.0
3,608,739	-		PP_3182	0.83	+0.5
3,608,739	-		PP_3182	0.83	+0.6
3,608,832	-		PP_3182	0.87	-1.6
3,608,867	-		PP_3182	0.89	-0.9
3,609,175	-				-0.7
3,609,175	-				+0.2
3,609,175	-				-0.2
3,609,213	+				-0.1
3,609,214	-				-0.2
3,609,214	-				+0.6
3,609,244	-				+0.1
3,609,250	+				+0.2
3,609,251	-				+1.5
3,609,264	-				+0.5
3,609,308	-				-0.1
3,609,308	-				-1.7
3,609,312	+				-0.9
3,609,370	+		PP_3183	0.12	+1.2
3,609,371	-		PP_3183	0.12	+0.7
3,609,371	-		PP_3183	0.12	+1.4
3,609,371	-		PP_3183	0.12	-1.7
3,609,371	-		PP_3183	0.12	+1.0
3,609,670	+		PP_3183	0.43	+0.4
3,609,671	-		PP_3183	0.43	+0.1
3,609,798	+		PP_3183	0.56	-1.3
3,609,799	-		PP_3183	0.56	-1.8
3,609,799	-		PP_3183	0.56	+2.2
3,609,868	+		PP_3183	0.63	+2.1
3,609,869	-		PP_3183	0.63	+0.1
3,609,869	-		PP_3183	0.63	-0.1
3,609,919	+		PP_3183	0.68	+0.3
3,609,963	+		PP_3183	0.73	-0.2
3,609,964	-		PP_3183	0.73	+1.1
3,609,964	-		PP_3183	0.73	+0.3
3,610,112	-		PP_3183	0.88	-1.0
3,610,112	-		PP_3183	0.88	+1.6
3,610,295	+				+0.1
3,610,295	+				-0.3
3,610,295	+				+0.2
3,610,296	-				-1.3
3,610,296	-				-0.4
3,610,408	-				-0.4
3,610,408	-				-0.4
3,610,641	+		PP_3184	0.10	+1.3
3,610,656	-		PP_3184	0.11	-0.5
3,610,656	-		PP_3184	0.11	-1.2
3,610,656	-		PP_3184	0.11	-0.0
3,610,703	+		PP_3184	0.12	-0.5
3,610,703	+		PP_3184	0.12	+0.4
3,610,703	+		PP_3184	0.12	-0.9
3,610,704	-		PP_3184	0.12	+0.7
3,610,704	-		PP_3184	0.12	+1.4
3,610,934	-		PP_3184	0.19	+1.2
3,610,946	+		PP_3184	0.19	+1.5
3,610,947	-		PP_3184	0.19	+0.0
3,610,947	-		PP_3184	0.19	-1.1
3,610,947	-		PP_3184	0.19	-0.5
3,611,069	+		PP_3184	0.23	-0.1
3,611,069	+		PP_3184	0.23	+1.9
3,611,070	-		PP_3184	0.23	+0.9
3,611,070	-		PP_3184	0.23	-0.4
3,611,070	-		PP_3184	0.23	+0.1
3,611,070	-		PP_3184	0.23	-0.2
3,611,070	-		PP_3184	0.23	-0.4
3,611,144	+		PP_3184	0.25	+1.1
3,611,145	-		PP_3184	0.25	-0.0