Strain Fitness in Pseudomonas putida KT2440 around PP_3119

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,527,379	+		PP_3118	0.42	+0.2
3,527,379	+		PP_3118	0.42	-1.1
3,527,380	-		PP_3118	0.42	+0.7
3,527,380	-		PP_3118	0.42	-0.6
3,527,398	+		PP_3118	0.43	+0.3
3,527,398	+		PP_3118	0.43	+1.0
3,527,481	-		PP_3118	0.49	+0.5
3,528,059	+		PP_3118	0.89	+0.4
3,528,116	+				-0.3
3,528,117	-				+0.0
3,528,117	-				+1.6
3,528,467	-				-3.0
3,528,523	+		PP_3119	0.11	+0.6
3,528,967	+		PP_3119	0.25	+0.5
3,528,968	-		PP_3119	0.25	-1.5
3,528,968	-		PP_3119	0.25	-1.1
3,529,002	+		PP_3119	0.26	-1.0
3,529,136	-		PP_3119	0.31	-0.7
3,529,187	+		PP_3119	0.32	+0.7
3,529,187	+		PP_3119	0.32	-0.3
3,529,187	+		PP_3119	0.32	-0.5
3,529,187	+		PP_3119	0.32	+0.3
3,529,188	-		PP_3119	0.32	+0.5
3,529,236	-		PP_3119	0.34	+1.1
3,529,236	-		PP_3119	0.34	+0.7
3,529,363	+		PP_3119	0.38	+0.1
3,529,363	+		PP_3119	0.38	-0.7
3,529,364	-		PP_3119	0.38	+1.1
3,529,364	-		PP_3119	0.38	-0.6
3,529,364	-		PP_3119	0.38	-0.2
3,529,364	-		PP_3119	0.38	+1.9
3,529,364	-		PP_3119	0.38	-0.9
3,529,420	+		PP_3119	0.40	+0.6
3,529,420	+		PP_3119	0.40	+0.4
3,529,421	-		PP_3119	0.40	-2.0
3,529,421	-		PP_3119	0.40	-2.1
3,529,467	-		PP_3119	0.41	-0.5
3,529,772	+		PP_3119	0.51	-0.6
3,529,773	-		PP_3119	0.51	+0.2
3,529,882	+		PP_3119	0.55	+0.3
3,529,882	+		PP_3119	0.55	-0.5
3,529,883	-		PP_3119	0.55	+0.8
3,529,883	-		PP_3119	0.55	+0.3
3,530,045	-		PP_3119	0.60	+0.7
3,530,080	+		PP_3119	0.61	-0.7
3,530,081	-		PP_3119	0.61	+0.1
3,530,116	-		PP_3119	0.62	-0.2
3,530,116	-		PP_3119	0.62	+0.1
3,530,177	-		PP_3119	0.64	+1.0
3,530,177	-				-0.9
3,530,177	-		PP_3119	0.64	-0.0
3,530,177	-		PP_3119	0.64	-2.1
3,530,179	-		PP_3119	0.64	-0.8
3,530,179	-		PP_3119	0.64	-0.8
3,530,179	-		PP_3119	0.64	-2.3
3,530,287	+		PP_3119	0.68	-0.7
3,530,288	-		PP_3119	0.68	+0.2
3,530,288	-		PP_3119	0.68	-0.7
3,530,341	+		PP_3119	0.70	-1.4
3,530,342	+		PP_3119	0.70	-0.1
3,530,342	-		PP_3119	0.70	-0.4
3,530,342	-		PP_3119	0.70	-1.8
3,530,342	-		PP_3119	0.70	-0.4
3,530,342	-		PP_3119	0.70	-0.2
3,530,386	+		PP_3119	0.71	+0.5
3,530,387	-		PP_3119	0.71	-1.7
3,530,387	-		PP_3119	0.71	-0.2
3,530,464	+		PP_3119	0.74	-1.7
3,530,513	+		PP_3119	0.75	+0.3
3,530,894	-		PP_3119	0.87	+1.0
3,530,911	-		PP_3119	0.88	+0.3
3,531,075	+				+1.0
3,531,301	+				+0.4
3,531,469	+				-4.2
3,531,470	-				-0.2
3,531,733	+		PP_3120	0.35	-0.6
3,531,771	+		PP_3120	0.40	+1.5
3,531,808	+		PP_3120	0.45	-0.8
3,531,808	+		PP_3120	0.45	-0.0
3,531,808	+		PP_3120	0.45	+0.0
3,531,808	+		PP_3120	0.45	+1.9
3,531,809	-		PP_3120	0.45	+0.7
3,531,809	-		PP_3120	0.45	+1.6
3,531,970	+		PP_3120	0.66	-0.9
3,532,135	+		PP_3120	0.88	-0.1
3,532,135	+		PP_3120	0.88	-0.4
3,532,136	-		PP_3120	0.88	+0.8
3,532,136	-		PP_3120	0.88	+0.8
3,532,136	-		PP_3120	0.88	+1.0
3,532,231	+				+1.9
3,532,231	+				-0.6
3,532,231	+				-0.0
3,532,231	+				+0.2
3,532,231	+				-0.3
3,532,232	-				-0.6
3,532,232	-				+0.4
3,532,279	-				-0.5
3,532,279	-				+0.1
3,532,282	+				+0.4
3,532,283	-				+1.4