Strain Fitness in Pseudomonas putida KT2440 around PP_3078

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,461,495	+		PP_3077	0.11	-0.6
3,461,519	+		PP_3077	0.14	-0.4
3,461,520	-		PP_3077	0.14	-3.3
3,461,699	+		PP_3077	0.31	-1.1
3,461,699	+		PP_3077	0.31	+0.3
3,461,700	-		PP_3077	0.31	-2.2
3,461,700	-		PP_3077	0.31	-1.3
3,461,805	-		PP_3077	0.41	+0.8
3,462,032	+		PP_3077	0.62	+0.2
3,462,033	-		PP_3077	0.62	+0.5
3,462,146	+		PP_3077	0.73	-0.3
3,462,197	+		PP_3077	0.78	-0.1
3,462,420	+				-0.5
3,462,420	+				-0.0
3,462,421	-				+1.3
3,462,421	-				+0.6
3,462,421	-				-0.5
3,462,422	+				+0.0
3,462,422	+				+1.5
3,462,422	+				-0.6
3,462,422	+				+0.5
3,462,423	-				-0.3
3,462,487	-				-0.0
3,462,487	-				+0.3
3,462,517	+				+0.1
3,462,517	+				-2.4
3,462,517	+				+0.2
3,462,517	+				+1.2
3,462,518	-				-2.5
3,462,518	-				-0.4
3,462,518	-				+0.7
3,462,518	-				+1.0
3,462,580	+				+0.4
3,462,581	-				-0.7
3,462,581	-				+0.3
3,462,583	+				-1.6
3,462,583	+				-0.2
3,462,583	+				+0.1
3,462,584	-				-0.7
3,462,601	+				-0.9
3,462,694	-		PP_3078	0.14	-2.1
3,462,760	+				+0.2
3,462,761	-		PP_3078	0.17	+0.2
3,462,766	+		PP_3078	0.17	+0.1
3,462,767	-		PP_3078	0.18	+0.4
3,462,820	+		PP_3078	0.20	+0.3
3,462,821	-		PP_3078	0.20	+0.1
3,462,847	+		PP_3078	0.22	-2.6
3,462,848	-		PP_3078	0.22	-1.3
3,462,981	-		PP_3078	0.29	-0.3
3,463,216	+		PP_3078	0.41	-0.1
3,463,216	+		PP_3078	0.41	-0.7
3,463,261	-		PP_3078	0.43	-0.1
3,463,265	+		PP_3078	0.43	-0.4
3,463,402	+		PP_3078	0.50	-0.4
3,463,414	+		PP_3078	0.51	-0.9
3,463,441	+		PP_3078	0.52	-0.4
3,463,441	+		PP_3078	0.52	-0.9
3,463,496	-		PP_3078	0.55	+0.1
3,463,692	+		PP_3078	0.65	+0.2
3,463,773	+		PP_3078	0.70	+1.1
3,463,810	+		PP_3078	0.72	-0.6
3,463,810	+		PP_3078	0.72	+0.3
3,463,974	-		PP_3078	0.80	-0.6
3,463,975	+		PP_3078	0.80	-2.3
3,463,975	+		PP_3078	0.80	-1.6
3,463,975	+		PP_3078	0.80	-1.1
3,463,975	+		PP_3078	0.80	+0.5
3,463,975	+		PP_3078	0.80	-1.7
3,463,976	-		PP_3078	0.80	-0.4
3,463,976	-		PP_3078	0.80	-0.2
3,463,988	-		PP_3078	0.81	+0.7
3,463,988	-		PP_3078	0.81	-0.8
3,464,012	-		PP_3078	0.82	-2.2
3,464,055	-		PP_3078	0.84	+0.1
3,464,056	+		PP_3078	0.84	-1.2
3,464,057	-		PP_3078	0.84	+0.4
3,464,133	+		PP_3078	0.88	-0.1
3,464,133	+		PP_3078	0.88	-0.6
3,464,134	-		PP_3078	0.88	-1.2
3,464,134	-		PP_3078	0.88	-0.2
3,464,134	-		PP_3078	0.88	+0.2
3,464,134	-		PP_3078	0.88	-0.4
3,464,134	-		PP_3078	0.88	+0.2
3,464,137	+		PP_3078	0.89	-0.3
3,464,137	+		PP_3078	0.89	-1.0
3,464,138	-		PP_3078	0.89	-0.0
3,464,182	+				-0.3
3,464,226	+				+0.5
3,464,226	+				-1.1
3,464,238	+				-1.5
3,464,253	+				-2.4
3,464,253	+				+0.1
3,464,253	+				-1.1
3,464,253	+				+0.0
3,464,254	-				+0.0
3,464,254	-				+0.3
3,464,328	+				-0.6
3,464,656	+				-1.6
3,464,705	-				-0.4
3,464,812	+				-0.1
3,464,813	-				-1.7
3,465,075	+		PP_3080	0.32	-0.8
3,465,075	+		PP_3080	0.32	+2.4