Strain Fitness in Pseudomonas putida KT2440 around PP_3076

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,459,841	+		PP_3075	0.64	+1.2
3,460,320	+				+2.1
3,460,320	+				-0.1
3,460,320	+				+1.8
3,460,321	-				+0.2
3,460,321	-				-1.4
3,460,321	-				+0.7
3,460,321	-				-0.2
3,460,321	-				-0.4
3,460,587	+		PP_3076	0.23	-0.9
3,460,587	+		PP_3076	0.23	+0.3
3,460,587	+		PP_3076	0.23	-0.4
3,460,588	-		PP_3076	0.23	+0.3
3,460,588	-		PP_3076	0.23	-1.5
3,460,673	+		PP_3076	0.31	-0.5
3,460,673	+		PP_3076	0.31	-0.3
3,460,674	-		PP_3076	0.31	+1.2
3,460,674	-		PP_3076	0.31	-1.3
3,460,677	+		PP_3076	0.31	-0.4
3,460,678	-		PP_3076	0.31	-0.4
3,460,678	-		PP_3076	0.31	-0.4
3,460,678	-		PP_3076	0.31	+1.0
3,460,678	-		PP_3076	0.31	-1.5
3,460,809	+		PP_3076	0.44	+1.5
3,460,809	+		PP_3076	0.44	-1.7
3,460,809	+		PP_3076	0.44	-0.9
3,460,810	-		PP_3076	0.44	+1.0
3,460,810	-		PP_3076	0.44	+0.0
3,460,833	-		PP_3076	0.47	+0.1
3,460,833	-		PP_3076	0.47	-0.1
3,460,833	-		PP_3076	0.47	-0.8
3,460,878	+		PP_3076	0.51	-1.8
3,461,062	+		PP_3076	0.69	+0.2
3,461,062	+		PP_3076	0.69	+0.6
3,461,063	-		PP_3076	0.69	-0.6
3,461,086	+		PP_3076	0.72	-0.4
3,461,136	+		PP_3076	0.76	+3.3
3,461,136	+		PP_3076	0.76	-0.3
3,461,136	+		PP_3076	0.76	+1.1
3,461,137	-		PP_3076	0.77	-1.1
3,461,137	-		PP_3076	0.77	+1.2
3,461,137	-		PP_3076	0.77	+0.3
3,461,149	-		PP_3076	0.78	+0.9
3,461,214	+		PP_3076	0.84	-0.9
3,461,229	+		PP_3076	0.86	-0.5
3,461,388	+				-0.5
3,461,420	+				+0.8
3,461,421	-				-0.5
3,461,495	+		PP_3077	0.11	-0.6
3,461,519	+		PP_3077	0.14	-0.4
3,461,520	-		PP_3077	0.14	-3.3
3,461,699	+		PP_3077	0.31	-1.1
3,461,699	+		PP_3077	0.31	+0.3
3,461,700	-		PP_3077	0.31	-2.2
3,461,700	-		PP_3077	0.31	-1.3
3,461,805	-		PP_3077	0.41	+0.8
3,462,032	+		PP_3077	0.62	+0.2
3,462,033	-		PP_3077	0.62	+0.5
3,462,146	+		PP_3077	0.73	-0.3
3,462,197	+		PP_3077	0.78	-0.1