Strain Fitness in Pseudomonas putida KT2440 around PP_3042

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,425,193	-		PP_3040	0.77	-0.4
3,425,200	+		PP_3040	0.79	-0.4
3,425,201	-		PP_3040	0.80	+0.2
3,425,201	-				-1.0
3,425,371	+				+1.4
3,425,415	+				+0.6
3,425,499	+		PP_3041	0.10	+0.1
3,425,499	+		PP_3041	0.10	+1.2
3,425,499	+		PP_3041	0.10	-2.3
3,425,500	-		PP_3041	0.10	-0.3
3,425,500	-		PP_3041	0.10	+0.3
3,425,763	+		PP_3041	0.53	+1.3
3,425,793	+		PP_3041	0.58	-1.4
3,425,897	-		PP_3041	0.75	+0.2
3,425,897	-		PP_3041	0.75	+0.4
3,426,035	+				-1.4
3,426,051	+				-1.2
3,426,051	+				+0.9
3,426,052	-				+1.2
3,426,129	-				+0.7
3,426,129	-				+1.1
3,426,129	-				+0.1
3,426,154	+				+0.7
3,426,154	+				+0.3
3,426,154	+				-0.4
3,426,155	-				-0.9
3,426,213	+				+0.0
3,426,213	+				+2.6
3,426,214	-				+0.1
3,426,220	+				-0.2
3,426,234	+				+0.0
3,426,235	-				-0.1
3,426,235	-				+0.4
3,426,285	-		PP_3042	0.11	+0.6
3,426,285	-		PP_3042	0.11	+0.8
3,426,368	+		PP_3042	0.16	-0.4
3,426,369	-		PP_3042	0.16	-0.9
3,426,369	-		PP_3042	0.16	-0.5
3,426,480	+		PP_3042	0.21	-0.1
3,426,481	-		PP_3042	0.21	+0.4
3,426,484	-		PP_3042	0.21	+1.0
3,426,551	+		PP_3042	0.24	+0.5
3,426,551	+		PP_3042	0.24	-1.0
3,426,552	-		PP_3042	0.25	-1.0
3,426,571	+		PP_3042	0.25	+1.3
3,426,572	-		PP_3042	0.26	+1.0
3,426,578	-		PP_3042	0.26	+0.6
3,426,682	+		PP_3042	0.31	+0.6
3,426,711	+		PP_3042	0.32	+1.5
3,426,712	-		PP_3042	0.32	+0.9
3,426,712	-		PP_3042	0.32	-0.7
3,426,733	+		PP_3042	0.33	-1.5
3,426,734	-		PP_3042	0.33	+1.7
3,426,757	+		PP_3042	0.35	+0.9
3,426,758	-		PP_3042	0.35	+0.5
3,426,760	+		PP_3042	0.35	-2.6
3,426,760	+		PP_3042	0.35	-0.8
3,426,761	-		PP_3042	0.35	+1.2
3,426,761	-		PP_3042	0.35	+1.4
3,426,761	-		PP_3042	0.35	+1.9
3,426,761	-		PP_3042	0.35	-1.8
3,426,761	-		PP_3042	0.35	-1.3
3,426,761	-		PP_3042	0.35	+0.6
3,426,761	-		PP_3042	0.35	+0.7
3,426,977	-		PP_3042	0.45	+0.4
3,427,032	+		PP_3042	0.48	+0.6
3,427,032	+		PP_3042	0.48	-1.7
3,427,165	+		PP_3042	0.55	+2.4
3,427,165	+		PP_3042	0.55	+0.1
3,427,165	+		PP_3042	0.55	+0.5
3,427,166	-		PP_3042	0.55	-0.1
3,427,166	-		PP_3042	0.55	+0.5
3,427,177	-				+0.2
3,427,436	+		PP_3042	0.68	-0.9
3,427,437	-		PP_3042	0.68	+0.3
3,427,438	+		PP_3042	0.68	+0.3
3,427,618	+		PP_3042	0.77	-0.9
3,427,627	+		PP_3042	0.77	+0.6
3,427,627	+		PP_3042	0.77	-0.2
3,427,627	+		PP_3042	0.77	+1.0
3,427,628	-		PP_3042	0.77	+1.0
3,427,798	+		PP_3042	0.86	+1.8
3,427,798	+		PP_3042	0.86	+0.1
3,427,798	+		PP_3042	0.86	-0.5
3,427,799	-		PP_3042	0.86	+0.6
3,427,816	+		PP_3042	0.87	+0.6
3,428,096	+				-1.4
3,428,096	+				+0.8
3,428,096	+				-0.3
3,428,096	+				-0.5
3,428,097	-				-0.6
3,428,098	+				-1.4
3,428,099	-				-0.1
3,428,160	-		PP_3043	0.34	-0.9
3,428,191	-		PP_3043	0.49	+0.6
3,428,274	-		PP_3043	0.89	-0.2
3,428,305	+				-0.1
3,428,305	+				+1.3
3,428,306	-				+0.3
3,428,306	-				+0.9
3,428,306	-				-0.5
3,428,306	-				-0.3
3,428,306	-				+0.2
3,428,356	+				-0.1
3,428,356	+				+1.3
3,428,357	-				-0.1
3,428,505	+		PP_3044	0.14	-0.2
3,428,506	-		PP_3044	0.14	+1.9
3,428,642	-		PP_3044	0.23	-1.6
3,428,808	+		PP_3044	0.34	+0.6
3,428,809	-		PP_3044	0.35	+0.4
3,428,839	-		PP_3044	0.37	-0.2
3,429,034	+		PP_3044	0.50	+0.5
3,429,034	+		PP_3044	0.50	-0.8