Strain Fitness in Pseudomonas putida KT2440 around PP_2919

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,318,236	-		PP_2918	0.61	-0.2
3,318,277	-		PP_2918	0.63	-1.6
3,318,285	+		PP_2918	0.64	-0.0
3,318,374	+		PP_2918	0.68	-0.2
3,318,399	+		PP_2918	0.69	+0.6
3,318,400	-		PP_2918	0.69	+1.2
3,318,400	-		PP_2918	0.69	+1.3
3,318,513	+		PP_2918	0.75	+0.1
3,318,514	-		PP_2918	0.75	+0.1
3,318,660	+		PP_2918	0.82	+1.2
3,318,660	+		PP_2918	0.82	-0.6
3,318,774	-		PP_2918	0.87	+0.3
3,318,921	+				+1.2
3,318,921	+				+0.3
3,318,954	+				-1.2
3,319,014	+				+1.4
3,319,014	+				+0.3
3,319,015	-				-0.1
3,319,015	-				-0.4
3,319,015	-				-0.5
3,319,073	+				+0.8
3,319,074	-				-0.2
3,319,074	-				-0.5
3,319,074	-				+1.7
3,319,155	+				-1.0
3,319,278	-				-1.1
3,319,492	+		PP_2919	0.29	+1.7
3,319,493	-		PP_2919	0.29	+1.5
3,319,523	+		PP_2919	0.32	-0.1
3,319,524	-		PP_2919	0.32	+0.7
3,319,564	+		PP_2919	0.37	+0.2
3,319,565	-		PP_2919	0.37	-0.1
3,319,769	+		PP_2919	0.59	+1.7
3,319,770	-		PP_2919	0.59	-1.1
3,319,770	-		PP_2919	0.59	-0.6
3,319,770	-		PP_2919	0.59	-0.3
3,319,770	-		PP_2919	0.59	+1.8
3,319,847	+		PP_2919	0.67	-1.0
3,319,847	+		PP_2919	0.67	+1.5
3,319,934	+		PP_2919	0.77	+2.4
3,319,934	+		PP_2919	0.77	+1.1
3,319,935	-		PP_2919	0.77	+1.1
3,319,935	-		PP_2919	0.77	-2.7
3,320,149	-				-0.6
3,320,149	-				-0.5
3,320,193	-				-0.5
3,320,195	-				-0.8
3,320,223	+				-1.9
3,320,224	-				-1.3
3,320,353	+		PP_2920	0.11	-0.9
3,320,499	+		PP_2920	0.31	+0.2
3,320,499	+		PP_2920	0.31	+1.4
3,320,500	-		PP_2920	0.31	-0.1
3,320,500	-		PP_2920	0.31	-0.3
3,320,500	-		PP_2920	0.31	+0.2
3,320,539	+		PP_2920	0.36	+1.3
3,320,617	+		PP_2920	0.46	+0.9
3,320,617	+		PP_2920	0.46	+0.1
3,320,617	+		PP_2920	0.46	+0.9
3,320,617	+		PP_2920	0.46	+1.4
3,320,698	+		PP_2920	0.57	+1.5
3,320,698	+		PP_2920	0.57	-1.0
3,320,767	+		PP_2920	0.66	+0.8
3,320,782	+		PP_2920	0.68	+2.1
3,320,828	-		PP_2920	0.74	+0.0
3,321,089	+				+0.7
3,321,090	-				-1.2
3,321,134	+				+1.4
3,321,134	+				+0.4
3,321,134	+				-0.3
3,321,134	+				+3.2
3,321,135	-				-0.3
3,321,135	-				+0.5