Strain Fitness in Pseudomonas putida KT2440 around PP_2900

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,296,240	+				+0.1
3,296,256	+				+2.1
3,296,257	-				-1.8
3,296,257	-				-0.2
3,296,257	-				-2.2
3,296,257	-				+0.5
3,296,301	-				-1.4
3,296,372	+				-0.1
3,296,426	+				+1.0
3,296,551	+		PP_2898	0.34	-0.7
3,296,551	+		PP_2898	0.34	+0.5
3,296,552	-		PP_2898	0.34	-0.2
3,296,837	+				+1.6
3,296,837	+				+1.0
3,296,837	+				+1.4
3,296,838	-				+1.4
3,296,838	-				-0.2
3,296,862	+				+0.9
3,296,936	+				+1.8
3,296,936	+				+1.3
3,296,936	+				+1.0
3,296,937	-				-2.5
3,297,018	-		PP_2899	0.13	+0.3
3,297,042	+		PP_2899	0.26	+0.7
3,297,202	-				+2.0
3,297,202	-				-0.7
3,297,202	-				+0.6
3,297,293	+		PP_2900	0.20	+3.5
3,297,293	+		PP_2900	0.20	+1.7
3,297,294	-				+3.0
3,297,398	-		PP_2900	0.48	+2.7
3,297,588	+				+3.2
3,297,588	+				+4.0
3,297,588	+				+2.9
3,297,589	-				+2.6
3,297,589	-				+3.8
3,297,589	-				+3.3
3,297,640	+				+1.2
3,297,640	+				+2.8
3,297,641	-				+2.7
3,297,641	-				+2.6
3,297,641	-				+2.1
3,297,643	+				+3.6
3,297,643	+				+1.6
3,297,643	+				+3.5
3,297,643	+				+2.5
3,297,644	-				+2.8
3,297,644	-				+1.5
3,297,724	+				+3.4
3,297,725	-				+0.3
3,297,728	-				+2.8
3,297,731	+				+3.2
3,297,731	+				+1.4
3,297,927	+				+0.5
3,297,992	+				-2.2
3,297,992	+				-1.7
3,297,992	+				+0.2
3,297,992	+				-1.4
3,297,993	-				-0.1
3,297,993	-				+1.1
3,297,993	-				-0.5
3,297,993	-				+0.4
3,297,993	-				-1.5
3,298,042	+		PP_2901	0.11	-2.0
3,298,043	-		PP_2901	0.11	-0.6
3,298,195	+		PP_2901	0.18	+0.1
3,298,541	-		PP_2901	0.33	-0.9