Strain Fitness in Pseudomonas putida KT2440 around PP_2893

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,289,878	+		PP_2892	0.52	-1.0
3,289,878	+		PP_2892	0.52	+1.3
3,289,878	+		PP_2892	0.52	-0.3
3,289,878	+		PP_2892	0.52	-0.2
3,289,878	+		PP_2892	0.52	+0.1
3,289,879	-		PP_2892	0.52	-0.3
3,289,879	-		PP_2892	0.52	-0.7
3,289,879	-		PP_2892	0.52	+1.5
3,289,929	+		PP_2892	0.55	-2.5
3,289,930	-		PP_2892	0.55	-0.3
3,290,281	+		PP_2892	0.75	+0.6
3,290,281	+		PP_2892	0.75	-0.2
3,290,282	-		PP_2892	0.75	+1.4
3,290,282	-		PP_2892	0.75	-0.1
3,290,335	+		PP_2892	0.78	-0.1
3,290,335	+		PP_2892	0.78	-1.4
3,290,336	-		PP_2892	0.78	-0.3
3,290,434	-		PP_2892	0.84	-0.4
3,290,484	+		PP_2892	0.86	-0.5
3,290,509	-		PP_2892	0.88	+0.5
3,290,514	+		PP_2892	0.88	-0.6
3,290,515	-		PP_2892	0.88	-1.0
3,290,898	+				-0.5
3,290,926	-				-0.0
3,291,237	+		PP_2893	0.14	-1.5
3,291,237	+		PP_2893	0.14	-1.2
3,291,238	-		PP_2893	0.14	-3.4
3,291,238	-		PP_2893	0.14	-1.1
3,291,238	-		PP_2893	0.14	-2.5
3,291,273	+		PP_2893	0.15	-0.2
3,291,279	+		PP_2893	0.15	-1.4
3,291,390	-		PP_2893	0.18	-2.4
3,291,390	-		PP_2893	0.18	+0.3
3,291,552	-		PP_2893	0.23	-0.9
3,291,552	-		PP_2893	0.23	-1.3
3,291,553	+		PP_2893	0.23	-1.1
3,291,554	-		PP_2893	0.23	-0.2
3,292,047	-		PP_2893	0.36	-0.2
3,292,120	+		PP_2893	0.38	-0.7
3,292,120	+		PP_2893	0.38	+0.2
3,292,121	-		PP_2893	0.38	-0.7
3,292,121	-		PP_2893	0.38	+1.7
3,292,121	-		PP_2893	0.38	+0.2
3,292,121	-		PP_2893	0.38	+0.3
3,292,335	+		PP_2893	0.44	+0.2
3,292,394	-		PP_2893	0.46	-0.5
3,292,488	+		PP_2893	0.48	+0.2
3,292,489	-		PP_2893	0.48	+0.1
3,293,616	+		PP_2893	0.79	-1.8
3,293,617	-		PP_2893	0.79	-0.2
3,293,662	-		PP_2893	0.80	+0.0
3,293,803	+		PP_2893	0.84	-1.4
3,293,918	+		PP_2893	0.87	+0.3
3,294,048	-				-0.3
3,294,077	-				+1.7
3,294,088	+				-0.9
3,294,088	+				-0.4
3,294,089	-				-0.3
3,294,089	-				+2.4
3,294,235	+				-1.6
3,294,309	-				-1.5
3,294,309	-				-0.1
3,294,309	-				+0.7
3,294,329	+				+0.9
3,294,330	-				-0.1
3,294,375	-				-2.5
3,294,390	-				+0.4
3,294,499	+		PP_2894	0.16	-0.9
3,294,499	+		PP_2894	0.16	+0.8
3,294,499	+		PP_2894	0.16	+1.3
3,294,500	-		PP_2894	0.16	+0.4
3,294,500	-		PP_2894	0.16	-1.0
3,294,729	-		PP_2894	0.57	+0.2
3,294,862	+		PP_2894	0.81	-0.8
3,294,862	+		PP_2894	0.81	+1.1
3,295,042	+				+0.4
3,295,095	+				-2.7
3,295,238	+		PP_2895	0.31	+1.2
3,295,239	-		PP_2895	0.31	-1.2
3,295,374	-		PP_2895	0.52	-0.4
3,295,374	-		PP_2895	0.52	-0.3
3,295,377	+		PP_2895	0.52	+1.6
3,295,389	+		PP_2895	0.54	+1.2
3,295,389	+		PP_2895	0.54	+0.3
3,295,390	-		PP_2895	0.54	+0.5