Strain Fitness in Pseudomonas putida KT2440 around PP_2860

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,261,208	+		PP_2858	0.88	-1.0
3,261,209	-		PP_2858	0.89	-0.3
3,261,223	+				+0.8
3,261,223	+				+0.5
3,261,226	+				+0.8
3,261,226	+				+0.2
3,261,226	+				+1.2
3,261,226	+				+0.2
3,261,226	+				-0.8
3,261,226	+				+0.4
3,261,226	+				-0.7
3,261,227	-				-0.2
3,261,227	-				+0.6
3,261,227	-				+1.0
3,261,233	+				+1.4
3,261,233	+				+1.2
3,261,234	-				-1.7
3,261,354	-				-0.0
3,261,600	+				-0.2
3,261,600	+				+0.8
3,261,601	-				-0.9
3,261,601	-				-1.8
3,261,652	+		PP_2859	0.17	+0.2
3,261,652	+		PP_2859	0.17	-0.4
3,261,872	-		PP_2859	0.55	+0.7
3,261,872	-		PP_2859	0.55	-1.5
3,261,872	-		PP_2859	0.55	-0.2
3,261,892	+		PP_2859	0.59	+0.9
3,261,892	+		PP_2859	0.59	-0.4
3,261,968	+		PP_2859	0.72	+0.5
3,261,969	-		PP_2859	0.72	+1.8
3,262,011	-		PP_2859	0.80	-0.3
3,262,033	+		PP_2859	0.84	+0.6
3,262,094	-				-0.1
3,262,131	+				-0.0
3,262,132	-				-0.4
3,262,232	-		PP_2860	0.19	-0.1
3,262,244	-		PP_2860	0.22	-1.9
3,262,244	-		PP_2860	0.22	-0.7
3,262,244	-		PP_2860	0.22	+1.6
3,262,244	-		PP_2860	0.22	+0.1
3,262,244	-				-0.0
3,262,244	-		PP_2860	0.22	-0.5
3,262,557	+		PP_2860	0.77	+0.5
3,262,557	+		PP_2860	0.77	+1.2
3,262,558	-		PP_2860	0.77	-3.5
3,262,558	-		PP_2860	0.77	+0.2
3,262,564	+		PP_2860	0.78	-2.1
3,262,564	+		PP_2860	0.78	+0.4
3,262,579	+				-0.3
3,262,579	+		PP_2860	0.81	+0.0
3,262,579	+		PP_2860	0.81	+2.4
3,262,580	-		PP_2860	0.81	-1.4
3,262,580	-		PP_2860	0.81	+0.8
3,262,580	-		PP_2860	0.81	-0.2
3,262,580	-		PP_2860	0.81	+0.9
3,262,750	+				+0.4
3,262,750	+				+0.6
3,262,773	-				-0.2
3,262,773	-				+0.3
3,262,773	-				-1.3
3,262,907	+				+0.6
3,262,908	-				-1.1
3,263,204	-		PP_2861	0.18	+1.7
3,263,204	-		PP_2861	0.18	-0.2
3,263,204	-		PP_2861	0.18	+0.9
3,263,254	-		PP_2861	0.21	+0.0
3,263,254	-		PP_2861	0.21	+1.9
3,263,254	-		PP_2861	0.21	-1.3
3,263,281	-		PP_2861	0.23	+0.5
3,263,520	+		PP_2861	0.37	+0.5
3,263,610	-		PP_2861	0.43	+0.6