Strain Fitness in Pseudomonas putida KT2440 around PP_2837

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,237,935	+		PP_2836	0.31	+0.7
3,237,936	-		PP_2836	0.31	-0.4
3,238,443	+		PP_2836	0.72	+0.4
3,238,443	+		PP_2836	0.72	+0.8
3,238,851	+				-1.4
3,238,854	+				-1.8
3,238,854	+				-2.1
3,238,854	+				-1.3
3,238,855	-				+0.7
3,238,855	-				-0.2
3,238,858	-				+0.4
3,238,858	-				+1.2
3,238,858	-				-1.5
3,238,888	+				+0.4
3,238,888	+				+0.3
3,238,899	+				-0.2
3,239,041	+		PP_2837	0.13	-1.4
3,239,042	-		PP_2837	0.13	-1.0
3,239,396	+				+1.3
3,239,396	+		PP_2837	0.40	-0.9
3,239,422	+		PP_2837	0.42	-0.5
3,239,423	-		PP_2837	0.42	-0.8
3,239,423	-		PP_2837	0.42	+1.3
3,239,423	-		PP_2837	0.42	-0.7
3,239,521	+		PP_2837	0.50	-1.2
3,239,521	+		PP_2837	0.50	-0.5
3,239,560	-		PP_2837	0.53	-0.3
3,239,596	+		PP_2837	0.55	+1.6
3,239,597	-		PP_2837	0.55	-0.7
3,239,597	-		PP_2837	0.55	-0.5
3,239,597	-		PP_2837	0.55	-1.3
3,239,597	-		PP_2837	0.55	+0.1
3,239,662	+		PP_2837	0.60	+1.0
3,239,663	-		PP_2837	0.60	+1.2
3,239,663	-		PP_2837	0.60	-2.3
3,239,692	+		PP_2837	0.63	-1.1
3,239,693	-		PP_2837	0.63	-1.3
3,239,748	-		PP_2837	0.67	+1.0
3,239,748	-		PP_2837	0.67	-2.5
3,239,896	-		PP_2837	0.78	+0.0
3,239,987	-		PP_2837	0.85	-0.4
3,240,100	+				+1.4
3,240,101	-				+0.0
3,240,114	-				-0.5
3,240,114	-				-1.2
3,240,114	-				+0.8
3,240,263	+				-1.2
3,240,336	-				+1.9
3,240,338	+				+0.7
3,240,339	-				-0.4
3,240,346	+				+0.7
3,240,346	+				-0.5
3,240,346	+				-0.3
3,240,346	+				-0.4
3,240,346	+				+0.1
3,240,346	+				-1.8
3,240,346	+				+0.2
3,240,347	-				+0.3
3,240,798	+		PP_2838	0.30	+0.8
3,240,798	+		PP_2838	0.30	+0.8
3,241,118	+		PP_2838	0.49	+0.1
3,241,119	-		PP_2838	0.49	+0.1