Strain Fitness in Pseudomonas putida KT2440 around PP_2781

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,166,752	-				+0.6
3,166,847	+				+0.3
3,166,848	-				-0.0
3,166,966	-				-1.2
3,167,176	+		PP_2781	0.26	+0.4
3,167,176	+		PP_2781	0.26	+0.4
3,167,177	-		PP_2781	0.26	+0.8
3,167,177	-		PP_2781	0.26	+0.1
3,167,177	-		PP_2781	0.26	+0.3
3,167,177	-		PP_2781	0.26	-2.1
3,167,177	-		PP_2781	0.26	+0.5
3,167,194	+		PP_2781	0.27	+1.1
3,167,392	+		PP_2781	0.44	+0.9
3,167,393	-		PP_2781	0.44	+1.6
3,167,393	-		PP_2781	0.44	+0.6
3,167,393	-		PP_2781	0.44	+0.9
3,167,393	-		PP_2781	0.44	+0.9
3,167,393	-		PP_2781	0.44	+1.8
3,167,394	+		PP_2781	0.44	+0.5
3,167,394	+		PP_2781	0.44	+0.5
3,167,395	-		PP_2781	0.44	+2.4
3,167,395	-		PP_2781	0.44	+0.7
3,167,395	-		PP_2781	0.44	+1.7
3,168,031	+				-0.9
3,168,044	-				-0.4
3,168,106	-				-0.2
3,168,122	-				+1.7
3,168,314	+				+0.4
3,168,315	-				+0.4
3,168,438	+		PP_2782	0.12	-0.1
3,168,640	-		PP_2782	0.19	+0.9
3,168,772	+		PP_2782	0.23	+0.3
3,168,773	-		PP_2782	0.23	+0.1
3,168,984	+		PP_2782	0.30	-0.5
3,169,033	-		PP_2782	0.32	+1.0