Strain Fitness in Pseudomonas putida KT2440 around PP_2780

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
3,164,661	+		PP_2779	0.16	-1.4
3,164,662	-		PP_2779	0.16	-1.0
3,164,662	-		PP_2779	0.16	-1.1
3,165,063	-		PP_2779	0.53	-1.7
3,165,091	-		PP_2779	0.55	+1.1
3,165,206	+		PP_2779	0.66	+0.0
3,165,207	-		PP_2779	0.66	+0.7
3,165,365	+		PP_2779	0.81	-0.9
3,165,365	+		PP_2779	0.81	-0.2
3,165,406	+		PP_2779	0.85	-0.2
3,165,407	-		PP_2779	0.85	+1.0
3,165,495	-				-0.2
3,165,564	+				+1.1
3,165,723	-		PP_2780	0.12	+0.9
3,166,752	-				+0.6
3,166,847	+				+0.3
3,166,848	-				-0.0
3,166,966	-				-1.2
3,167,176	+		PP_2781	0.26	+0.4
3,167,176	+		PP_2781	0.26	+0.4
3,167,177	-		PP_2781	0.26	+0.8
3,167,177	-		PP_2781	0.26	+0.1
3,167,177	-		PP_2781	0.26	+0.3
3,167,177	-		PP_2781	0.26	-2.1
3,167,177	-		PP_2781	0.26	+0.5
3,167,194	+		PP_2781	0.27	+1.1
3,167,392	+		PP_2781	0.44	+0.9
3,167,393	-		PP_2781	0.44	+1.6
3,167,393	-		PP_2781	0.44	+0.6
3,167,393	-		PP_2781	0.44	+0.9
3,167,393	-		PP_2781	0.44	+0.9
3,167,393	-		PP_2781	0.44	+1.8
3,167,394	+		PP_2781	0.44	+0.5
3,167,394	+		PP_2781	0.44	+0.5
3,167,395	-		PP_2781	0.44	+2.4
3,167,395	-		PP_2781	0.44	+0.7
3,167,395	-		PP_2781	0.44	+1.7