Strain Fitness in Pseudomonas putida KT2440 around PP_2744

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2742 and PP_2743 overlap by 4 nucleotidesPP_2743 and PP_2744 are separated by 195 nucleotidesPP_2744 and PP_2745 are separated by 95 nucleotides PP_2742: PP_2742 - conserved protein of unknown function, at 3,125,320 to 3,125,679 _2742 PP_2743: PP_2743 - Acetyltransferase, GNAT family, at 3,125,676 to 3,126,269 _2743 PP_2744: PP_2744 - Ribose-phosphate pyrophosphokinase family protein, at 3,126,465 to 3,127,424 _2744 PP_2745: PP_2745 - Universal stress protein family, at 3,127,520 to 3,128,416 _2745 Position (kb) 3126 3127 3128Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3125.498 kb on + strand, within PP_2742at 3125.498 kb on + strand, within PP_2742at 3125.498 kb on + strand, within PP_2742at 3125.567 kb on + strand, within PP_2742at 3125.570 kb on + strand, within PP_2742at 3125.571 kb on - strand, within PP_2742at 3125.605 kb on + strand, within PP_2742at 3125.606 kb on - strand, within PP_2742at 3125.606 kb on - strand, within PP_2742at 3125.713 kb on + strandat 3125.714 kb on - strandat 3125.718 kb on + strandat 3125.718 kb on + strandat 3125.719 kb on - strandat 3125.719 kb on - strandat 3125.722 kb on + strandat 3125.722 kb on + strandat 3125.723 kb on - strandat 3125.830 kb on + strand, within PP_2743at 3125.844 kb on + strand, within PP_2743at 3125.845 kb on - strand, within PP_2743at 3125.845 kb on - strand, within PP_2743at 3125.845 kb on - strand, within PP_2743at 3125.946 kb on + strand, within PP_2743at 3125.947 kb on - strand, within PP_2743at 3125.947 kb on - strand, within PP_2743at 3125.947 kb on - strand, within PP_2743at 3125.947 kb on - strand, within PP_2743at 3125.947 kb on - strand, within PP_2743at 3125.950 kb on + strand, within PP_2743at 3125.950 kb on + strand, within PP_2743at 3125.950 kb on + strand, within PP_2743at 3125.950 kb on + strand, within PP_2743at 3125.950 kb on + strand, within PP_2743at 3125.951 kb on - strand, within PP_2743at 3125.951 kb on - strand, within PP_2743at 3125.951 kb on - strand, within PP_2743at 3125.951 kb on - strand, within PP_2743at 3125.951 kb on - strand, within PP_2743at 3125.951 kb on - strand, within PP_2743at 3125.951 kb on - strand, within PP_2743at 3125.951 kb on - strand, within PP_2743at 3125.965 kb on - strand, within PP_2743at 3125.965 kb on - strand, within PP_2743at 3125.980 kb on + strand, within PP_2743at 3126.037 kb on + strand, within PP_2743at 3126.037 kb on + strand, within PP_2743at 3126.037 kb on + strand, within PP_2743at 3126.037 kb on + strand, within PP_2743at 3126.037 kb on + strand, within PP_2743at 3126.037 kb on + strand, within PP_2743at 3126.038 kb on - strand, within PP_2743at 3126.038 kb on - strand, within PP_2743at 3126.038 kb on - strand, within PP_2743at 3126.038 kb on - strand, within PP_2743at 3126.038 kb on - strand, within PP_2743at 3126.038 kb on - strand, within PP_2743at 3126.038 kb on - strand, within PP_2743at 3126.041 kb on + strand, within PP_2743at 3126.041 kb on + strand, within PP_2743at 3126.041 kb on + strand, within PP_2743at 3126.041 kb on + strand, within PP_2743at 3126.041 kb on + strand, within PP_2743at 3126.041 kb on + strand, within PP_2743at 3126.041 kb on + strand, within PP_2743at 3126.042 kb on - strand, within PP_2743at 3126.042 kb on - strand, within PP_2743at 3126.042 kb on - strand, within PP_2743at 3126.042 kb on - strand, within PP_2743at 3126.042 kb on - strand, within PP_2743at 3126.042 kb on - strand, within PP_2743at 3126.042 kb on - strand, within PP_2743at 3126.042 kb on - strand, within PP_2743at 3126.042 kb on - strand, within PP_2743at 3126.042 kb on - strand, within PP_2743at 3126.177 kb on + strand, within PP_2743at 3126.177 kb on + strand, within PP_2743at 3126.177 kb on + strand, within PP_2743at 3126.178 kb on - strand, within PP_2743at 3126.178 kb on - strand, within PP_2743at 3126.181 kb on + strand, within PP_2743at 3126.182 kb on - strand, within PP_2743at 3126.263 kb on + strandat 3126.310 kb on + strandat 3126.310 kb on + strandat 3126.311 kb on - strandat 3126.333 kb on + strandat 3126.341 kb on + strandat 3126.342 kb on - strandat 3126.343 kb on + strandat 3126.343 kb on + strandat 3126.344 kb on - strandat 3126.344 kb on - strandat 3126.344 kb on - strandat 3126.955 kb on - strand, within PP_2744at 3127.110 kb on - strand, within PP_2744at 3127.110 kb on - strand, within PP_2744at 3127.110 kb on - strand, within PP_2744at 3127.110 kb on - strand, within PP_2744at 3127.110 kb on - strand, within PP_2744at 3127.110 kb on - strand, within PP_2744at 3127.126 kb on + strand, within PP_2744at 3127.127 kb on - strand, within PP_2744at 3127.136 kb on - strand, within PP_2744at 3127.206 kb on + strand, within PP_2744at 3127.206 kb on + strand, within PP_2744at 3127.206 kb on + strand, within PP_2744at 3127.207 kb on - strand, within PP_2744at 3127.207 kb on - strand, within PP_2744at 3127.241 kb on - strand, within PP_2744at 3127.375 kb on + strandat 3127.488 kb on + strandat 3127.492 kb on + strandat 3127.573 kb on + strandat 3127.573 kb on + strandat 3127.573 kb on + strandat 3127.609 kb on - strandat 3127.654 kb on - strand, within PP_2745at 3127.807 kb on - strand, within PP_2745at 3127.833 kb on + strand, within PP_2745at 3127.955 kb on + strand, within PP_2745at 3128.019 kb on - strand, within PP_2745at 3128.410 kb on + strandat 3128.410 kb on + strandat 3128.411 kb on - strandat 3128.411 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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3,125,498 + PP_2742 0.49 -0.5
3,125,498 + PP_2742 0.49 -0.6
3,125,498 + PP_2742 0.49 -2.3
3,125,567 + PP_2742 0.69 +0.3
3,125,570 + PP_2742 0.69 -0.1
3,125,571 - PP_2742 0.70 +0.1
3,125,605 + PP_2742 0.79 +0.1
3,125,606 - PP_2742 0.79 -3.0
3,125,606 - PP_2742 0.79 +1.2
3,125,713 + -0.0
3,125,714 - -1.7
3,125,718 + -0.9
3,125,718 + +0.6
3,125,719 - -1.1
3,125,719 - -1.2
3,125,722 + +0.6
3,125,722 + -0.4
3,125,723 - -0.1
3,125,830 + PP_2743 0.26 -1.1
3,125,844 + PP_2743 0.28 +2.2
3,125,845 - PP_2743 0.28 +1.0
3,125,845 - PP_2743 0.28 -0.8
3,125,845 - PP_2743 0.28 -1.2
3,125,946 + PP_2743 0.45 +1.0
3,125,947 - PP_2743 0.46 -0.5
3,125,947 - PP_2743 0.46 +0.3
3,125,947 - PP_2743 0.46 +0.2
3,125,947 - PP_2743 0.46 -2.8
3,125,947 - PP_2743 0.46 -0.3
3,125,950 + PP_2743 0.46 +1.2
3,125,950 + PP_2743 0.46 +0.8
3,125,950 + PP_2743 0.46 +0.1
3,125,950 + PP_2743 0.46 +1.2
3,125,950 + PP_2743 0.46 +0.5
3,125,951 - PP_2743 0.46 +0.1
3,125,951 - PP_2743 0.46 +0.0
3,125,951 - PP_2743 0.46 -0.1
3,125,951 - PP_2743 0.46 -1.1
3,125,951 - PP_2743 0.46 -2.9
3,125,951 - PP_2743 0.46 -1.1
3,125,951 - PP_2743 0.46 -1.0
3,125,951 - PP_2743 0.46 +0.2
3,125,965 - PP_2743 0.49 +1.4
3,125,965 - PP_2743 0.49 -2.1
3,125,980 + PP_2743 0.51 +1.5
3,126,037 + PP_2743 0.61 -0.1
3,126,037 + PP_2743 0.61 -0.2
3,126,037 + PP_2743 0.61 -0.9
3,126,037 + PP_2743 0.61 -1.2
3,126,037 + PP_2743 0.61 -0.1
3,126,037 + PP_2743 0.61 +1.1
3,126,038 - PP_2743 0.61 +0.2
3,126,038 - PP_2743 0.61 +0.4
3,126,038 - PP_2743 0.61 +2.0
3,126,038 - PP_2743 0.61 -1.7
3,126,038 - PP_2743 0.61 +2.3
3,126,038 - PP_2743 0.61 -0.8
3,126,038 - PP_2743 0.61 -0.3
3,126,041 + PP_2743 0.61 +0.2
3,126,041 + PP_2743 0.61 +0.2
3,126,041 + PP_2743 0.61 +2.1
3,126,041 + PP_2743 0.61 +0.6
3,126,041 + PP_2743 0.61 +0.3
3,126,041 + PP_2743 0.61 +0.4
3,126,041 + PP_2743 0.61 -0.2
3,126,042 - PP_2743 0.62 +0.7
3,126,042 - PP_2743 0.62 +1.3
3,126,042 - PP_2743 0.62 -0.3
3,126,042 - PP_2743 0.62 -0.4
3,126,042 - PP_2743 0.62 -0.2
3,126,042 - PP_2743 0.62 -0.7
3,126,042 - PP_2743 0.62 -1.3
3,126,042 - PP_2743 0.62 +0.2
3,126,042 - PP_2743 0.62 -1.9
3,126,042 - PP_2743 0.62 -0.0
3,126,177 + PP_2743 0.84 +1.2
3,126,177 + PP_2743 0.84 -1.6
3,126,177 + PP_2743 0.84 -1.6
3,126,178 - PP_2743 0.85 +1.2
3,126,178 - PP_2743 0.85 +0.1
3,126,181 + PP_2743 0.85 -1.1
3,126,182 - PP_2743 0.85 -0.1
3,126,263 + +0.8
3,126,310 + +0.1
3,126,310 + +0.3
3,126,311 - +0.7
3,126,333 + -0.4
3,126,341 + +0.3
3,126,342 - +1.1
3,126,343 + -1.8
3,126,343 + -0.3
3,126,344 - +0.8
3,126,344 - -1.1
3,126,344 - -3.4
3,126,955 - PP_2744 0.51 +1.0
3,127,110 - PP_2744 0.67 +0.9
3,127,110 - PP_2744 0.67 -0.5
3,127,110 - PP_2744 0.67 +1.2
3,127,110 - PP_2744 0.67 +0.7
3,127,110 - PP_2744 0.67 -0.1
3,127,110 - PP_2744 0.67 +0.3
3,127,126 + PP_2744 0.69 +1.0
3,127,127 - PP_2744 0.69 +1.3
3,127,136 - PP_2744 0.70 -1.1
3,127,206 + PP_2744 0.77 +0.1
3,127,206 + PP_2744 0.77 +1.6
3,127,206 + PP_2744 0.77 +1.9
3,127,207 - PP_2744 0.77 +0.9
3,127,207 - PP_2744 0.77 +1.5
3,127,241 - PP_2744 0.81 -0.6
3,127,375 + -1.3
3,127,488 + +1.4
3,127,492 + +0.7
3,127,573 + +0.2
3,127,573 + +0.3
3,127,573 + -0.3
3,127,609 - -1.0
3,127,654 - PP_2745 0.15 -0.5
3,127,807 - PP_2745 0.32 -1.4
3,127,833 + PP_2745 0.35 -0.8
3,127,955 + PP_2745 0.48 +0.4
3,128,019 - PP_2745 0.56 +1.3
3,128,410 + +0.6
3,128,410 + +0.2
3,128,411 - +0.6
3,128,411 - +1.2

Or see this region's nucleotide sequence