Strain Fitness in Pseudomonas putida KT2440 around PP_2538

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
2,881,599	+		PP_2536	0.34	-0.7
2,881,683	+		PP_2536	0.47	+1.3
2,881,683	+		PP_2536	0.47	-1.3
2,881,797	+		PP_2536	0.66	+0.4
2,881,810	+		PP_2536	0.68	+0.8
2,881,811	-		PP_2536	0.68	+1.1
2,881,961	+				+0.5
2,881,961	+				+0.4
2,881,961	+				-2.2
2,881,962	-				-0.9
2,882,112	+				+0.3
2,882,112	+				-0.8
2,882,112	+				+0.2
2,882,112	+				+1.2
2,882,113	-				-0.6
2,882,124	+				-1.1
2,882,156	-				+0.1
2,882,156	-				-0.4
2,882,156	-				+0.4
2,882,156	-				-0.3
2,882,156	-				-2.1
2,882,163	+				+0.5
2,882,164	-				+0.8
2,882,164	-				-0.6
2,882,167	-				-0.5
2,882,247	-		PP_2537	0.14	+0.9
2,882,426	+		PP_2537	0.72	-1.1
2,882,426	+		PP_2537	0.72	+0.0
2,882,426	+		PP_2537	0.72	+0.3
2,882,427	-		PP_2537	0.72	+0.5
2,882,427	-		PP_2537	0.72	-1.2
2,882,427	-		PP_2537	0.72	+0.7
2,882,427	-		PP_2537	0.72	-1.8
2,882,430	-		PP_2537	0.73	+0.0
2,882,706	+		PP_2538	0.16	+0.5
2,882,706	+		PP_2538	0.16	-0.0
2,882,706	+		PP_2538	0.16	-0.0
2,882,706	+		PP_2538	0.16	-0.2
2,882,706	+		PP_2538	0.16	-0.4
2,882,707	-		PP_2538	0.16	+0.6
2,882,707	-		PP_2538	0.16	-0.3
2,882,712	+		PP_2538	0.17	-1.0
2,882,721	+		PP_2538	0.18	+0.1
2,882,773	-		PP_2538	0.25	-0.2
2,882,773	-		PP_2538	0.25	-0.5
2,882,865	+		PP_2538	0.38	-0.1
2,883,059	+		PP_2538	0.65	-0.7
2,883,060	-		PP_2538	0.65	-1.0
2,883,060	-		PP_2538	0.65	-0.4
2,883,103	-		PP_2538	0.71	-1.0
2,883,117	+		PP_2538	0.73	-0.6
2,883,184	-		PP_2538	0.82	-0.5
2,883,253	+				+0.4
2,883,254	-				+1.1
2,883,254	-				+0.1
2,883,268	+				+0.2
2,883,268	+				+0.4
2,883,269	-				+2.3
2,883,400	+				+0.7
2,883,400	+				+0.7
2,883,400	+				-0.4
2,883,401	-				+1.6
2,883,401	-				+0.6
2,883,401	-				-0.5
2,883,402	+				-1.3
2,883,402	+				-0.1
2,883,403	-				+0.7
2,883,403	-				+0.3
2,883,530	+				-0.4
2,883,531	-				-1.5
2,883,608	-				+0.1
2,883,672	+		PP_2539	0.25	-0.7
2,883,764	+		PP_2539	0.35	-0.7
2,883,764	+		PP_2539	0.35	+1.0
2,883,765	-		PP_2539	0.35	+1.0
2,883,777	-		PP_2539	0.36	+1.6
2,883,851	+		PP_2539	0.44	+0.2
2,884,035	-		PP_2539	0.64	+0.4
2,884,035	-		PP_2539	0.64	-1.4
2,884,035	-		PP_2539	0.64	+0.8
2,884,087	+		PP_2539	0.70	+0.2