Strain Fitness in Pseudomonas putida KT2440 around PP_2518

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
2,864,529	+		PP_2517	0.31	-0.9
2,864,529	+		PP_2517	0.31	+1.1
2,864,530	-		PP_2517	0.31	+0.7
2,864,628	+		PP_2517	0.39	-0.3
2,864,700	+		PP_2517	0.45	+0.1
2,864,701	-		PP_2517	0.45	+0.2
2,864,701	-		PP_2517	0.45	-0.6
2,864,722	-		PP_2517	0.46	+0.8
2,864,874	+		PP_2517	0.59	-0.9
2,864,875	-		PP_2517	0.59	+0.5
2,864,875	-		PP_2517	0.59	+0.9
2,865,126	+		PP_2517	0.79	-1.6
2,865,126	+		PP_2517	0.79	-0.0
2,865,127	-		PP_2517	0.79	-1.3
2,865,127	-		PP_2517	0.79	+0.0
2,865,127	-		PP_2517	0.79	-1.5
2,865,244	-		PP_2517	0.89	+0.6
2,865,258	+		PP_2517	0.90	-1.2
2,865,265	+				+0.2
2,865,542	+				-0.0
2,865,605	+				+2.1
2,865,606	-				-0.6
2,865,606	-				+1.1
2,865,653	-		PP_2518	0.11	+0.2
2,865,848	+		PP_2518	0.26	-1.5
2,865,854	+		PP_2518	0.27	-0.8
2,865,855	-		PP_2518	0.27	-0.4
2,865,855	-		PP_2518	0.27	+0.2
2,865,989	+		PP_2518	0.38	-0.5
2,865,989	+		PP_2518	0.38	+0.7
2,865,989	+		PP_2518	0.38	+1.2
2,865,990	-		PP_2518	0.38	-2.0
2,865,990	-		PP_2518	0.38	-0.2
2,865,992	+		PP_2518	0.38	+0.3
2,865,992	+		PP_2518	0.38	-0.6
2,865,993	-		PP_2518	0.38	-0.3
2,866,050	+		PP_2518	0.42	-0.5
2,866,110	+		PP_2518	0.47	-0.9
2,866,286	+		PP_2518	0.61	-0.6
2,866,286	+		PP_2518	0.61	-2.2
2,866,322	-		PP_2518	0.64	+1.7
2,866,322	-		PP_2518	0.64	+1.4
2,866,541	+		PP_2518	0.81	-1.2
2,866,541	+		PP_2518	0.81	+2.2
2,866,575	-		PP_2518	0.84	+0.4
2,866,575	-		PP_2518	0.84	-0.4
2,866,575	-		PP_2518	0.84	-0.7
2,866,614	+		PP_2518	0.87	-1.1
2,866,616	+		PP_2518	0.87	-0.3
2,866,617	-		PP_2518	0.87	-1.2
2,866,617	-		PP_2518	0.87	-1.1
2,866,617	-		PP_2518	0.87	+1.0
2,866,617	-		PP_2518	0.87	-1.7
2,866,617	-		PP_2518	0.87	-0.4
2,866,617	-		PP_2518	0.87	+0.3
2,866,617	-		PP_2518	0.87	-1.1
2,866,625	-		PP_2518	0.88	-2.2
2,866,767	+				+1.7
2,866,767	+				-0.4
2,866,767	+				-1.1
2,866,810	+				+0.3
2,866,991	-				+0.3
2,866,991	-				-1.8
2,867,019	-				+0.1
2,867,322	+				+0.6
2,867,624	+				+0.3
2,867,624	+				-0.4
2,867,624	+				+0.1
2,867,625	-				-0.7
2,867,625	-				+0.4