Strain Fitness in Pseudomonas putida KT2440 around PP_2444

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
2,790,700	+		PP_2443	0.30	+1.2
2,790,700	+		PP_2443	0.30	-0.2
2,790,700	+		PP_2443	0.30	+1.2
2,790,701	-		PP_2443	0.30	-0.0
2,790,701	-		PP_2443	0.30	+0.4
2,790,701	-		PP_2443	0.30	+0.4
2,790,785	+		PP_2443	0.37	-0.4
2,790,785	+		PP_2443	0.37	+0.5
2,790,901	-		PP_2443	0.47	-2.0
2,791,008	+		PP_2443	0.55	-1.2
2,791,020	+		PP_2443	0.56	-1.3
2,791,227	+		PP_2443	0.74	+0.6
2,791,300	+		PP_2443	0.80	+0.9
2,791,300	+		PP_2443	0.80	+0.9
2,791,417	-		PP_2443	0.89	-0.9
2,791,417	-		PP_2443	0.89	+0.1
2,791,417	-		PP_2443	0.89	-2.0
2,791,417	-		PP_2443	0.89	+0.1
2,791,417	-		PP_2443	0.89	+1.1
2,791,510	-				+0.3
2,791,557	+				-0.3
2,791,585	+				+0.3
2,791,590	+				+0.2
2,791,590	+				-1.2
2,791,599	+				-0.1
2,791,600	-				+0.1
2,791,600	-				+1.6
2,791,600	-				-0.6
2,791,601	+				+0.2
2,791,601	+				-1.4
2,791,601	+				+0.8
2,791,601	+				-0.3
2,791,602	-				-0.1
2,791,602	-				-0.1
2,791,640	+				+1.9
2,791,640	+				-0.1
2,791,731	-				+0.3
2,791,805	-		PP_2444	0.18	-0.0
2,792,063	+		PP_2444	0.47	-1.1
2,792,064	-		PP_2444	0.47	-0.4
2,792,064	-		PP_2444	0.47	+1.0
2,792,105	-		PP_2444	0.51	+0.2
2,792,219	+		PP_2444	0.64	+0.2
2,792,219	+		PP_2444	0.64	-1.5
2,792,336	+		PP_2444	0.77	-0.9
2,792,336	+		PP_2444	0.77	-1.2
2,792,337	-		PP_2444	0.77	-0.6
2,792,337	-		PP_2444	0.77	+0.1
2,792,337	-		PP_2444	0.77	-1.1
2,792,408	+		PP_2444	0.85	-0.6
2,792,409	-		PP_2444	0.85	+0.0
2,792,513	+				-1.4
2,792,514	-				-1.2
2,792,514	-				-0.6
2,792,528	+				-1.3
2,792,532	+				-0.9
2,792,532	+				-1.0
2,792,532	+				-0.9
2,792,533	-				-1.4
2,792,533	-				+0.5
2,792,533	-				-1.0
2,792,533	-				+0.5
2,792,603	-				-1.3
2,792,614	+				-2.4
2,792,615	-				+0.7
2,792,615	-				-1.2
2,792,615	-				-2.2
2,792,615	-				+0.1
2,792,653	-				-0.6
2,792,691	-				+0.1
2,792,691	-				-0.8
2,792,945	+				-0.9
2,792,946	-				-0.2
2,792,965	+				+0.4
2,792,966	-				-0.0
2,792,972	-				+0.3
2,792,992	+				-0.9
2,792,993	-				+1.4
2,793,015	+		PP_2445	0.10	-0.2
2,793,015	+		PP_2445	0.10	-0.1
2,793,076	-		PP_2445	0.18	-0.8
2,793,433	+		PP_2445	0.66	-0.7
2,793,433	+		PP_2445	0.66	-1.4