Strain Fitness in Pseudomonas putida KT2440 around PP_2408

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
2,750,278	+		PP_2406	0.75	-0.9
2,750,278	+		PP_2406	0.75	-0.9
2,750,282	+		PP_2406	0.76	-0.0
2,750,282	+		PP_2406	0.76	+0.5
2,750,283	-		PP_2406	0.76	+0.2
2,750,433	-				+1.5
2,750,866	-		PP_2407	0.84	-2.7
2,751,065	+				+0.6
2,751,159	+				-0.0
2,751,160	-				+0.5
2,751,675	-		PP_2408	0.39	+1.5
2,751,778	-		PP_2408	0.47	+1.0
2,751,971	+		PP_2408	0.62	-0.3
2,752,005	+		PP_2408	0.65	-0.3
2,752,213	-		PP_2408	0.81	-1.0
2,752,280	+		PP_2408	0.87	+0.0
2,752,281	-		PP_2408	0.87	-1.4
2,752,281	-		PP_2408	0.87	-0.5
2,752,281	-		PP_2408	0.87	-1.3
2,752,300	+		PP_2408	0.88	-0.4
2,752,300	+		PP_2408	0.88	-1.3
2,752,342	-				-1.0
2,752,463	+				-0.2
2,752,464	-				+1.0
2,752,685	+		PP_2409	0.20	-1.1
2,752,685	+		PP_2409	0.20	-2.6
2,752,685	+		PP_2409	0.20	-1.4
2,752,686	-		PP_2409	0.20	-0.6
2,752,686	-		PP_2409	0.20	-0.2
2,752,987	+		PP_2409	0.45	+0.6
2,753,305	+				+0.8