Strain Fitness in Pseudomonas putida KT2440 around PP_2320

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
2,648,102	+		PP_2318	0.14	-1.6
2,648,106	-		PP_2318	0.15	-0.3
2,648,106	-		PP_2318	0.15	-0.2
2,648,106	-		PP_2318	0.15	+1.1
2,648,106	-				+0.3
2,648,268	-		PP_2318	0.42	-0.9
2,648,395	+		PP_2318	0.63	-1.1
2,648,395	+		PP_2318	0.63	+1.1
2,648,422	-		PP_2318	0.67	-1.1
2,648,422	-		PP_2318	0.67	-0.2
2,648,433	+		PP_2318	0.69	-0.4
2,648,457	+		PP_2318	0.73	-1.6
2,648,628	-				-3.5
2,648,649	-				-1.8
2,648,704	+		PP_2319	0.17	-0.7
2,648,704	+		PP_2319	0.17	-2.2
2,648,704	+		PP_2319	0.17	-0.7
2,648,704	+		PP_2319	0.17	-0.2
2,648,705	-		PP_2319	0.17	-1.2
2,648,705	-		PP_2319	0.17	+0.2
2,648,710	+		PP_2319	0.19	-1.8
2,648,710	+		PP_2319	0.19	-2.3
2,648,815	-		PP_2319	0.51	+0.1
2,648,815	-		PP_2319	0.51	-2.4
2,649,042	+				-0.4
2,649,139	+				-2.5
2,649,225	+		PP_2320	0.14	-4.1
2,649,225	+		PP_2320	0.14	-5.1
2,649,403	-		PP_2320	0.33	-4.9
2,649,411	+		PP_2320	0.33	-4.8
2,649,412	-		PP_2320	0.34	-4.8
2,649,412	-		PP_2320	0.34	-4.8
2,649,414	+		PP_2320	0.34	-3.6
2,649,414	+		PP_2320	0.34	-5.0
2,649,415	-		PP_2320	0.34	-5.3
2,649,415	-		PP_2320	0.34	-5.2
2,649,415	-		PP_2320	0.34	-5.2
2,649,441	+		PP_2320	0.37	-3.9
2,649,441	+		PP_2320	0.37	-4.3
2,649,441	+		PP_2320	0.37	-3.2
2,649,441	+		PP_2320	0.37	-4.4
2,649,442	-		PP_2320	0.37	-5.4
2,649,792	+		PP_2320	0.72	-4.2
2,649,792	+		PP_2320	0.72	-3.1
2,649,793	-		PP_2320	0.72	-1.9
2,649,793	-		PP_2320	0.72	-5.1
2,649,793	-		PP_2320	0.72	-5.3
2,649,823	-		PP_2320	0.76	-3.7
2,649,823	-		PP_2320	0.76	-6.4
2,649,823	-		PP_2320	0.76	-4.7
2,649,823	-		PP_2320	0.76	-1.1
2,649,823	-		PP_2320	0.76	-5.1
2,649,823	-		PP_2320	0.76	-4.2
2,649,891	-		PP_2320	0.83	-5.7
2,649,931	+				-2.3
2,649,931	+		PP_2320	0.87	-5.1
2,649,980	+				-3.8
2,649,980	+				-5.2
2,649,981	-				-5.3
2,650,059	+				-2.4
2,650,064	+				-0.2
2,650,092	-				-2.6
2,650,176	+				-4.6
2,650,193	+				-3.7
2,650,196	+				-3.4
2,650,196	+				-4.8
2,650,196	+				-4.5
2,650,221	+		PP_2322	0.10	-5.5
2,650,222	-		PP_2322	0.11	-3.7
2,650,222	-		PP_2322	0.11	-2.8
2,650,222	-		PP_2322	0.11	-4.1
2,650,222	-		PP_2322	0.11	-2.7
2,650,222	-		PP_2322	0.11	-4.3
2,650,296	+		PP_2322	0.40	-4.3
2,650,297	-		PP_2322	0.40	-3.2
2,650,301	+		PP_2322	0.42	-4.0
2,650,470	+				-3.5
2,650,473	+				-5.2
2,650,478	-				-2.5
2,650,511	+				-3.8
2,650,511	+				-3.7
2,650,515	+				-3.7
2,650,516	-				-4.2
2,650,516	-				-3.8
2,650,516	-				-2.9
2,650,518	+				-3.1
2,650,518	+				-2.8
2,650,525	+				-4.7
2,650,525	+				-4.1
2,650,534	+				-2.9
2,650,534	+				-4.2
2,650,669	+				-3.4
2,650,681	+				-3.6
2,650,682	-				+0.2
2,650,708	-				-1.0
2,650,708	-				-0.3
2,650,710	+				-3.6
2,650,710	+				-4.6
2,650,711	-				+0.9
2,650,711	-				-0.1
2,650,809	+				-3.5
2,650,810	-				-1.0
2,650,810	-				+1.4
2,650,810	-				-0.1
2,650,812	+				-4.1
2,650,812	+				-0.8
2,650,812	+				-4.9
2,650,812	+				-3.0
2,650,812	+				-4.2
2,650,812	+				-2.9
2,650,812	+				-2.9
2,650,813	-				+1.0
2,650,813	-				-4.0
2,650,813	-				-0.1
2,650,813	-				-1.1
2,650,813	-				-1.0
2,650,813	-				+0.3
2,650,813	-				-2.2
2,650,813	-				+0.2
2,650,813	-				-3.1
2,650,813	-				-0.2
2,650,813	-				-2.7
2,650,813	-				-3.6
2,650,843	+				-4.7
2,650,843	+				-4.2
2,650,844	-				-0.6
2,650,880	+		PP_2323	0.18	-4.5
2,650,915	-		PP_2323	0.26	-2.2
2,650,919	+		PP_2323	0.27	-3.2
2,650,919	+		PP_2323	0.27	-3.7
2,650,920	-		PP_2323	0.27	+0.1
2,650,920	-		PP_2323	0.27	-0.4
2,650,949	+		PP_2323	0.34	-3.9
2,650,949	+		PP_2323	0.34	-3.3
2,650,949	+		PP_2323	0.34	-3.2
2,650,949	+		PP_2323	0.34	-4.1
2,650,950	-		PP_2323	0.34	-0.9
2,650,950	-		PP_2323	0.34	-2.3
2,651,029	+		PP_2323	0.52	-3.0
2,651,030	-		PP_2323	0.52	-0.7
2,651,030	-		PP_2323	0.52	-0.9
2,651,038	+		PP_2323	0.54	-4.6
2,651,038	+		PP_2323	0.54	-1.1
2,651,039	-		PP_2323	0.54	+0.4