Strain Fitness in Pseudomonas putida KT2440 around PP_2293

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
2,618,497	+		PP_2291	0.87	-0.5
2,618,538	-				+0.4
2,618,578	-				+0.2
2,618,602	+				+2.8
2,618,705	+		PP_2292	0.21	+0.2
2,618,705	+		PP_2292	0.21	+1.1
2,618,705	+		PP_2292	0.21	-0.8
2,618,706	-		PP_2292	0.21	-0.3
2,618,808	-		PP_2292	0.35	-0.2
2,618,969	+		PP_2292	0.55	-2.0
2,618,970	-		PP_2292	0.56	+0.7
2,618,970	-		PP_2292	0.56	-1.0
2,618,983	+		PP_2292	0.57	-0.3
2,618,984	-		PP_2292	0.57	+0.0
2,619,075	-		PP_2292	0.69	-1.0
2,619,075	-		PP_2292	0.69	+0.6
2,619,140	+		PP_2292	0.78	+0.2
2,619,140	+		PP_2292	0.78	-0.3
2,619,202	+		PP_2292	0.86	+0.5
2,619,332	-				-0.5
2,619,341	-				+0.3
2,619,370	+				-0.1
2,619,516	-				+0.2
2,619,523	-				+0.5
2,619,563	+				-0.5
2,619,564	-				+1.2
2,619,564	-				-0.6
2,619,579	-				+0.0
2,619,700	-		PP_2293	0.14	-0.1
2,619,841	-		PP_2293	0.22	+0.0
2,620,035	-		PP_2293	0.34	+1.2
2,620,035	-		PP_2293	0.34	-0.1
2,620,068	-		PP_2293	0.36	-0.1
2,620,068	-		PP_2293	0.36	+0.8
2,620,145	+		PP_2293	0.40	+1.5
2,620,146	-		PP_2293	0.41	-0.8
2,620,255	+		PP_2293	0.47	+0.7
2,620,255	+		PP_2293	0.47	-1.4
2,620,256	-		PP_2293	0.47	+1.4
2,620,256	-		PP_2293	0.47	-1.0
2,620,266	-		PP_2293	0.48	+0.1
2,620,266	-		PP_2293	0.48	+0.5
2,620,266	-		PP_2293	0.48	-0.2
2,620,429	+		PP_2293	0.57	+0.3
2,620,430	-		PP_2293	0.57	-0.2
2,620,430	-		PP_2293	0.57	-1.1
2,620,463	+		PP_2293	0.59	-1.3
2,620,471	+		PP_2293	0.60	+0.4
2,620,472	-		PP_2293	0.60	+1.4
2,620,500	-		PP_2293	0.62	+0.2
2,620,500	-		PP_2293	0.62	-0.4
2,620,519	+		PP_2293	0.63	+1.0
2,620,520	-		PP_2293	0.63	+0.5
2,620,556	+		PP_2293	0.65	-0.9
2,620,557	-		PP_2293	0.65	-1.5
2,620,715	+		PP_2293	0.74	+0.8
2,620,715	+		PP_2293	0.74	-0.4
2,620,715	+		PP_2293	0.74	+1.0
2,620,715	+		PP_2293	0.74	+1.2
2,620,716	-		PP_2293	0.74	-0.4
2,620,898	-		PP_2293	0.85	+1.9
2,620,901	+				+0.4
2,620,901	+		PP_2293	0.85	+0.1
2,620,902	-		PP_2293	0.85	-0.5
2,620,902	-		PP_2293	0.85	+1.3
2,620,913	+		PP_2293	0.86	+0.2
2,620,914	-		PP_2293	0.86	+1.0
2,620,995	-				+1.6
2,621,001	+				-0.8
2,621,148	-				+1.2
2,621,154	-				-0.0
2,621,154	-				-0.1
2,621,154	-				+0.9
2,621,168	+				-0.0
2,621,169	-				+0.3
2,621,184	-				+1.3
2,621,234	+		PP_2294	0.11	+0.4
2,621,234	+		PP_2294	0.11	+1.8
2,621,234	+		PP_2294	0.11	+0.1
2,621,234	+		PP_2294	0.11	+0.0
2,621,234	+		PP_2294	0.11	+0.8
2,621,235	-		PP_2294	0.11	-0.1
2,621,235	-		PP_2294	0.11	-0.6
2,621,235	-		PP_2294	0.11	-0.7
2,621,235	-		PP_2294	0.11	-0.1
2,621,235	-		PP_2294	0.11	+0.8
2,621,253	+		PP_2294	0.15	+0.2
2,621,253	+		PP_2294	0.15	+0.3
2,621,257	+		PP_2294	0.16	+1.2
2,621,257	+		PP_2294	0.16	-0.7
2,621,258	-		PP_2294	0.16	-1.6
2,621,318	+		PP_2294	0.30	+0.2
2,621,318	+		PP_2294	0.30	+1.1
2,621,318	+				+1.0
2,621,318	+		PP_2294	0.30	-0.0
2,621,319	-		PP_2294	0.30	-1.0
2,621,358	-		PP_2294	0.39	-1.6
2,621,358	-		PP_2294	0.39	-0.1
2,621,358	-		PP_2294	0.39	+1.6
2,621,358	-		PP_2294	0.39	+0.0
2,621,454	+		PP_2294	0.61	-0.0
2,621,454	+		PP_2294	0.61	+0.1
2,621,455	-		PP_2294	0.61	-0.7
2,621,624	+				-0.7
2,621,641	+				+0.4
2,621,641	+				-0.3
2,621,641	+				-1.0
2,621,641	+				+0.8
2,621,641	+				+0.6
2,621,641	+				+0.2
2,621,641	+				+0.6
2,621,642	-				-2.7
2,621,642	-				+1.0
2,621,670	+				+0.1
2,621,670	+				+1.4
2,621,670	+				+0.8
2,621,670	+				+1.3
2,621,710	-				-1.5
2,621,768	+				+0.5
2,621,768	+				-2.3
2,621,769	-				+0.2
2,621,818	-				+0.1
2,621,826	-				-2.3
2,621,826	-				-0.0
2,621,856	+				+1.8
2,621,856	+				+0.7
2,621,866	+				-1.2
2,621,867	-				-1.0
2,621,867	-				-1.5
2,621,867	-				+0.5
2,621,896	+				-0.5
2,621,896	+				-0.3
2,621,896	+				-0.2
2,621,896	+				+0.4
2,621,896	+				-0.0
2,621,896	+				+0.1
2,621,897	-				-0.9
2,621,897	-				-0.5
2,621,897	-				+2.0
2,621,898	+				+0.1
2,621,899	-				+0.1
2,621,901	-				+0.6
2,621,901	-				-0.1
2,621,909	+				+0.6
2,621,909	+				-0.7
2,621,911	+				-1.0
2,621,912	-				-0.3
2,621,932	+				-0.8
2,621,932	+				-0.5
2,621,932	+				-0.3
2,621,932	+				+0.6
2,621,932	+				+0.8
2,621,933	-				-1.9
2,621,934	+				+0.5
2,621,934	+				+0.5
2,621,935	-				+1.4
2,621,935	-				-0.4
2,622,035	+		PP_5515	0.28	+1.3
2,622,035	+		PP_5515	0.28	+0.0
2,622,035	+		PP_5515	0.28	+0.3
2,622,036	-		PP_5515	0.28	+1.0
2,622,036	-		PP_5515	0.28	-1.0
2,622,037	+		PP_5515	0.29	+1.3
2,622,037	+		PP_5515	0.29	-0.6
2,622,037	+		PP_5515	0.29	+1.1
2,622,037	+		PP_5515	0.29	-0.3
2,622,038	-		PP_5515	0.29	+0.1
2,622,038	-		PP_5515	0.29	+0.1
2,622,039	+		PP_5515	0.30	+0.7
2,622,039	+		PP_5515	0.30	-0.5
2,622,039	+		PP_5515	0.30	+1.7
2,622,039	+		PP_5515	0.30	-1.1
2,622,039	+		PP_5515	0.30	-0.5
2,622,039	+		PP_5515	0.30	+1.3
2,622,040	-		PP_5515	0.30	-1.2
2,622,040	-		PP_5515	0.30	-2.0
2,622,040	-		PP_5515	0.30	-0.6
2,622,040	-		PP_5515	0.30	+0.1
2,622,040	-		PP_5515	0.30	-0.2
2,622,040	-		PP_5515	0.30	+0.3
2,622,090	+		PP_5515	0.51	-0.3
2,622,091	-		PP_5515	0.51	+1.4