Strain Fitness in Pseudomonas putida KT2440 around PP_2240

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
2,553,902	+				-1.5
2,554,030	+				+0.1
2,554,030	+				-0.5
2,554,051	+				-0.2
2,554,051	+				+0.7
2,554,051	+				+0.0
2,554,051	+				+0.5
2,554,051	+				+0.3
2,554,051	+				-0.3
2,554,051	+				-0.8
2,554,051	+				+0.7
2,554,057	+				+0.9
2,554,058	-				-0.2
2,554,071	+				-0.2
2,554,084	+				-1.4
2,554,084	+				+1.4
2,554,088	+				-0.3
2,554,088	+				+1.6
2,554,089	-				+0.3
2,554,089	-				+0.2
2,554,089	-				-1.3
2,554,089	-				-0.8
2,554,129	+				-0.1
2,554,130	-				-1.3
2,554,130	-				-0.5
2,554,345	-		PP_2240	0.17	+0.7
2,554,356	+		PP_2240	0.18	+0.2
2,554,356	+		PP_2240	0.18	-1.9
2,554,357	-		PP_2240	0.18	+0.0
2,554,417	+		PP_2240	0.21	-1.5
2,554,458	+		PP_2240	0.23	-1.0
2,554,458	+		PP_2240	0.23	-3.6
2,554,458	+		PP_2240	0.23	-0.5
2,554,458	+		PP_2240	0.23	-1.0
2,554,459	-		PP_2240	0.23	-2.5
2,554,459	-		PP_2240	0.23	-1.1
2,554,459	-		PP_2240	0.23	-0.9
2,554,459	-		PP_2240	0.23	-1.5
2,554,459	-		PP_2240	0.23	-0.5
2,554,478	+		PP_2240	0.24	-0.6
2,554,539	+		PP_2240	0.28	-0.6
2,554,539	+		PP_2240	0.28	-2.4
2,554,539	+		PP_2240	0.28	-0.9
2,554,540	-		PP_2240	0.28	-2.9
2,554,540	-		PP_2240	0.28	-0.8
2,554,605	-		PP_2240	0.31	+0.7
2,554,744	+		PP_2240	0.38	-1.4
2,554,744	+		PP_2240	0.38	-1.2
2,554,744	+		PP_2240	0.38	-0.8
2,554,744	+		PP_2240	0.38	-1.2
2,554,756	-		PP_2240	0.39	-0.1
2,554,756	-		PP_2240	0.39	-0.4
2,554,761	+		PP_2240	0.39	+0.8
2,554,762	-		PP_2240	0.39	-1.5
2,554,762	-		PP_2240	0.39	+0.7
2,554,817	+		PP_2240	0.42	-1.5
2,554,899	+		PP_2240	0.47	-0.8
2,554,900	-		PP_2240	0.47	-1.4
2,555,154	+		PP_2240	0.60	+0.3
2,555,155	-		PP_2240	0.60	-1.1
2,555,155	-		PP_2240	0.60	-3.1
2,555,385	-		PP_2240	0.73	-1.4
2,555,385	-		PP_2240	0.73	-1.7
2,555,487	+		PP_2240	0.78	+0.5
2,555,524	-		PP_2240	0.80	-0.4
2,555,754	+				-0.1
2,555,754	+				-0.6
2,555,754	+				-1.8
2,555,755	-				+1.7
2,555,898	+				-0.3
2,555,899	-				-1.6
2,555,939	+				-0.5
2,555,940	-				+0.4
2,555,940	-				-1.6
2,555,977	+				-0.3
2,555,978	-				+3.7
2,556,051	-				+0.4
2,556,076	+				+0.0
2,556,211	-				+2.4
2,556,424	-		PP_2241	0.26	-0.9
2,556,481	+		PP_2241	0.31	+0.2
2,556,496	+		PP_2241	0.32	+0.9
2,556,497	-		PP_2241	0.32	+0.6
2,556,514	-		PP_2241	0.34	-0.7
2,556,514	-		PP_2241	0.34	+1.0
2,556,514	-		PP_2241	0.34	+0.4
2,556,549	+		PP_2241	0.36	-0.2
2,556,549	+		PP_2241	0.36	+0.9
2,556,550	-		PP_2241	0.37	-0.4
2,556,550	-		PP_2241	0.37	+1.2
2,556,632	-		PP_2241	0.43	-0.2
2,556,632	-		PP_2241	0.43	+1.1
2,556,732	-		PP_2241	0.52	-0.1
2,556,733	+		PP_2241	0.52	+0.1
2,556,734	-		PP_2241	0.52	-0.5
2,556,734	-		PP_2241	0.52	-1.0
2,556,734	-		PP_2241	0.52	-3.5
2,556,734	-		PP_2241	0.52	-1.4
2,556,734	-		PP_2241	0.52	-1.7
2,556,734	-		PP_2241	0.52	+0.5
2,556,734	-		PP_2241	0.52	+0.5
2,556,762	+		PP_2241	0.54	+0.3
2,556,762	+		PP_2241	0.54	+1.4
2,556,807	+		PP_2241	0.58	-1.4
2,556,808	-		PP_2241	0.58	+0.6
2,556,840	+		PP_2241	0.61	+0.7
2,556,841	-		PP_2241	0.61	+1.3