Strain Fitness in Pseudomonas putida KT2440 around PP_2125

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
2,423,541	+		PP_2124	0.49	+1.3
2,423,542	-		PP_2124	0.49	+0.6
2,423,826	+		PP_2124	0.72	+1.3
2,423,827	-		PP_2124	0.72	+1.1
2,423,928	+		PP_2124	0.80	-2.0
2,423,985	-		PP_2124	0.85	+2.8
2,424,068	-				+1.6
2,424,108	+				+0.7
2,424,109	-				-0.9
2,424,109	-				+0.1
2,424,150	+				+0.4
2,424,151	-				+0.2
2,424,151	-				-0.2
2,424,151	-				+0.1
2,424,205	+				-0.5
2,424,205	+				-0.3
2,424,206	-				+0.3
2,424,270	+				-0.2
2,424,271	-				-1.1
2,424,271	-				+0.8
2,424,283	+				-1.9
2,424,400	+				+1.0
2,424,401	-				+0.1
2,424,538	+		PP_2125	0.16	-0.7
2,424,539	-		PP_2125	0.16	-1.1
2,424,539	-		PP_2125	0.16	-0.2
2,424,600	+		PP_2125	0.23	-0.4
2,424,866	+		PP_2125	0.51	-1.0
2,424,867	-		PP_2125	0.51	+0.0
2,424,867	-		PP_2125	0.51	+0.1
2,424,906	+		PP_2125	0.55	-1.0
2,424,941	-		PP_2125	0.59	-1.0
2,424,955	+		PP_2125	0.61	+0.8
2,424,956	-		PP_2125	0.61	+0.6
2,424,961	+		PP_2125	0.61	-1.1
2,424,961	+		PP_2125	0.61	-0.9
2,425,088	+		PP_2125	0.75	+0.6
2,425,357	+				-0.2
2,425,503	+		PP_2126	0.30	-0.1
2,425,590	-		PP_2126	0.43	-0.3
2,425,606	+		PP_2126	0.46	-0.1
2,425,658	+		PP_2126	0.54	-1.2
2,425,737	+		PP_2126	0.66	-0.7
2,425,737	+		PP_2126	0.66	+0.8
2,425,831	+		PP_2126	0.80	+0.1
2,425,831	+		PP_2126	0.80	-0.4
2,425,831	+		PP_2126	0.80	-0.6
2,425,831	+		PP_2126	0.80	-0.3
2,425,832	-		PP_2126	0.80	+0.4
2,425,843	+		PP_2126	0.82	+0.0
2,425,940	-				+0.1
2,425,940	-				+0.3
2,425,940	-				-0.3
2,425,948	+				+0.7
2,425,948	+				-0.5
2,425,948	+				-1.0
2,425,949	-				-0.1
2,425,953	+				+0.5
2,425,969	+				+1.0
2,425,970	-				+0.3
2,426,260	+		PP_2127	0.33	+0.2
2,426,260	+		PP_2127	0.33	+0.9
2,426,260	+		PP_2127	0.33	-0.2
2,426,261	-		PP_2127	0.33	-0.5