Strain Fitness in Pseudomonas putida KT2440 around PP_2012

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
2,282,853	+				-1.1
2,283,159	+		PP_2011	0.33	+0.6
2,283,160	-		PP_2011	0.33	-0.1
2,283,209	+		PP_2011	0.38	+0.4
2,283,358	-		PP_2011	0.53	+0.1
2,283,358	-		PP_2011	0.53	-0.6
2,283,516	+		PP_2011	0.69	+0.5
2,283,517	-		PP_2011	0.70	-0.4
2,283,517	-		PP_2011	0.70	-0.3
2,283,517	-		PP_2011	0.70	+1.8
2,283,517	-		PP_2011	0.70	+0.7
2,283,519	+		PP_2011	0.70	+0.1
2,283,520	-		PP_2011	0.70	-1.9
2,283,520	-		PP_2011	0.70	+1.6
2,283,520	-		PP_2011	0.70	-0.5
2,284,835	+				+0.7
2,284,991	+		PP_2013	0.25	-1.7
2,284,992	-		PP_2013	0.25	-0.4
2,284,992	-		PP_2013	0.25	-0.0
2,284,992	-		PP_2013	0.25	-0.1
2,285,042	+		PP_2013	0.30	-1.6
2,285,042	+		PP_2013	0.30	+0.6
2,285,043	-		PP_2013	0.30	+0.7
2,285,043	-		PP_2013	0.30	-0.4
2,285,144	+		PP_2013	0.41	+0.5
2,285,144	+		PP_2013	0.41	-1.7
2,285,235	-		PP_2013	0.50	-0.5
2,285,517	-		PP_2013	0.79	+0.1
2,285,606	+		PP_2013	0.88	+0.4
2,285,662	+				+0.7