Strain Fitness in Pseudomonas putida KT2440 around PP_1996

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
2,263,052	-				+0.4
2,263,099	+				-0.6
2,263,166	+				+0.9
2,263,166	+				-0.1
2,263,240	+				+1.7
2,263,304	+		PP_1995	0.15	+0.7
2,263,305	-		PP_1995	0.16	-0.2
2,263,452	+		PP_1995	0.39	-0.4
2,263,493	+		PP_1995	0.46	-0.3
2,263,563	-		PP_1995	0.57	-0.0
2,263,595	+		PP_1995	0.62	-0.0
2,263,595	+		PP_1995	0.62	-0.7
2,263,595	+		PP_1995	0.62	+0.2
2,263,595	+		PP_1995	0.62	-1.6
2,263,595	+		PP_1995	0.62	+0.4
2,263,596	-		PP_1995	0.62	-0.5
2,263,596	-		PP_1995	0.62	-0.0
2,263,596	-		PP_1995	0.62	+0.2
2,263,596	-		PP_1995	0.62	-0.4
2,263,596	-		PP_1995	0.62	+0.2
2,263,596	-		PP_1995	0.62	-0.9
2,263,596	-		PP_1995	0.62	-1.1
2,263,596	-		PP_1995	0.62	+0.3
2,263,596	-		PP_1995	0.62	-2.5
2,263,596	-		PP_1995	0.62	+1.2
2,263,596	-		PP_1995	0.62	+0.3
2,263,599	+		PP_1995	0.63	+0.3
2,263,599	+		PP_1995	0.63	-0.3
2,263,733	+		PP_1995	0.85	-3.3
2,263,922	+				+0.1
2,263,922	+				+1.0